Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5630g00001 ATGAAGAAGCCAAAACACCACTCATCGTCGGCCAACGCTGACCGGCGAGTGGAGCCTGATTCCGGTGAGTTTGTCGCCAAGATGAAGAACGGTCGCCAGAGACGGCTCAAAATCAAGCAAATGAAGTACACTTGCCAGGCGAAGATCCGCATCAGGAATGGAACCGTCGGCGTCTCGCCGACGCCGGCGGAGGACCTGGAGGGAGGGAGCAGAGAGATTCATGATCGCGTGGAGATATCTTTGTCGCTGGCGGCGGCGTCGTCGTCCTCGGAGGAGGAGGAGCGGTCATTGTCGGAGAAAAACGACGGTGTTTTGTCGTACGGGTCAACGTCTGTGATTGGGAGCAGGAAGGAGATGGAGGACGCGGTGAGTGCGGAGATAGGGTTTGCTGCGAAGGAGAAAGGGAAGTACGACTTCTTCGCGGTGTACGACGGCCACGGCGGAGCGCAGGTGGCGAAGGCGTGTCGCGAGCGGTTGCACCGGCTGGTTGCGGAGGAAGTGGAGAGGAGTGAGAGTCCCGTGGAATGGGACTGGCAGGGAGTGATGGAAGGGTGCTTCCGTAAAATGGACAGCGAGGTCGCCGGTAATGCGGCCGTCAGGACTGTGGGTTCCACGGCGGTTGTAGCTGTGATCGCGGCGGAGGAGCTTGTCGTCGCTAATTGCGGTGATTGTAGGGCTGTGTTGGGAAGAGGAGGTGAGGCCGTCGACTTGTCTAGTGATCATAAGCCCGATAGACCAGACGAGTTGATGCGAATCGAAGAGGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCTACTTCAAGATCCATAGGAGATCAGTACCTTCGACCTTATGTGATATCAAATCCAGAAGTGACAGTGACGAAGCGAAGCAGCAAGGATGAATTTGTGATACTAGCAAGTGATGGATTGTGGGATGTTATGTCGAGTGAAGTTGCGTGCCAAGTTGTAAGGAAATGCCTGAATGGACAGATTAGGAGAGTGTGCAATGGAGTTGGGAACCATGAAAACCGTGCTGCCGAGGCTGCAAGCCTCTTAGCTGAGATAGCATTGGCAAAGGGAAGTAAAGATAACACCAGTGTCATTGTAGTTGAGCTAAGAGGAACGGTAACATAA 1137 0.5462 MKKPKHHSSSANADRRVEPDSGEFVAKMKNGRQRRLKIKQMKYTCQAKIRIRNGTVGVSPTPAEDLEGGSREIHDRVEISLSLAAASSSSEEEERSLSEKNDGVLSYGSTSVIGSRKEMEDAVSAEIGFAAKEKGKYDFFAVYDGHGGAQVAKACRERLHRLVAEEVERSESPVEWDWQGVMEGCFRKMDSEVAGNAAVRTVGSTAVVAVIAAEELVVANCGDCRAVLGRGGEAVDLSSDHKPDRPDELMRIEEAGGRVINWNGQRVLGVLATSRSIGDQYLRPYVISNPEVTVTKRSSKDEFVILASDGLWDVMSSEVACQVVRKCLNGQIRRVCNGVGNHENRAAEAASLLAEIALAKGSKDNTSVIVVELRGTVT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5630g00001 378 SMART PP2C_SIG_2 124 373 IPR001932 -
Vium5630g00001 378 Gene3D - 99 376 IPR036457 -
Vium5630g00001 378 PANTHER PROTEIN PHOSPHATASE 90 373 IPR015655 GO:0004722|GO:0006470
Vium5630g00001 378 SMART PP2C_4 95 371 IPR001932 -
Vium5630g00001 378 CDD PP2Cc 106 373 IPR001932 -
Vium5630g00001 378 ProSitePatterns PPM-type phosphatase domain signature. 139 147 IPR000222 GO:0043169
Vium5630g00001 378 SUPERFAMILY PP2C-like 103 374 IPR036457 -
Vium5630g00001 378 MobiDBLite consensus disorder prediction 1 31 - -
Vium5630g00001 378 FunFam Protein phosphatase 2C 51 99 378 - -
Vium5630g00001 378 ProSiteProfiles PPM-type phosphatase domain profile. 106 373 IPR001932 -
Vium5630g00001 378 MobiDBLite consensus disorder prediction 84 103 - -
Vium5630g00001 378 Pfam Protein phosphatase 2C 107 366 IPR001932 -
Vium5630g00001 378 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5630g00001 Vium-Chr5630 7382 10051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5630g00001 82 374 PP2C-type Phosphatase Gene Family AT2G29380 50.637 8.17e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5630g00001 K14497 - gmx:100807235 578.556