Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5629g00002 ATGGCAATCCAGCAACACAATCACCAACTACAACATAACGAAAATGTCTCATCTCTCCTTGATGCCCTTTACTGTGATGAAGCAAAGTGGGAAGACGAAGAGGAGGAGGAAGAAGAAGATGAAGAGAGTGATGTCACCACAAACAACGATGCATGTAACGGACCTTCTCTTTTCCCTCTGCTCTTGTTGGAGCAAGACTTCTTCTGGGAAGACCAGGAACTGAACTCTCTCTTTTCCAAAGAGAAGCTTCAGCATCAACAACTTTACGGCTATAACATTGATGCTAATAACAATAATGATGCTTGTGACAGTACTAACAATAATGTGCGTTTGGACCCTTCTTTCTCTCAGCCTCGTCGTGAGGCTGTGGAATGGATGCTCAAAGTCAATGCTCACTATGGATTTTCTGCTCTCACTGCAACACTGGCCGTTACTTACCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGATGATCCAGCTCGTGGCTGTCACTTGCATCTCTTTGGCAGCAAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTAGACCTTCAAGTGCAGGACACTAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCCACCCTCAAATGGAAGATGCATCCCGTGACCCCACTCTCGTTTCTAGATCACATCATAAGAAGGCTTGGATTGAAAACTCATCTTCACTGGGAGTTTCTCAGGCGCTGCGAGCGTCTTCTTCTGTCTGTGCTTTTGGATGCGAGATTTGTTGGGTGCCTTCCTTCTGTTTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGAACACAGTGGTGGGATGGAATACAAAAATCAGCTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAGTGTTATAATGCTATTCTCCAACGCTCAAATGGCAATAGTTATGGTCATAACAACAACATTTACAAACGCAAGTATGAGGAAATTCCAGACAGCCCAAGTGGCGTAATTGATGCTGCATTTGGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCACTATATTCATCACCAGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAATCGGGTCATTGTCGGAATTGTTGGCACATCTCCTTGA 1191 0.445 MAIQQHNHQLQHNENVSSLLDALYCDEAKWEDEEEEEEEDEESDVTTNNDACNGPSLFPLLLLEQDFFWEDQELNSLFSKEKLQHQQLYGYNIDANNNNDACDSTNNNVRLDPSFSQPRREAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCERLLLSVLLDARFVGCLPSVLATATMLHVIDQIEHSGGMEYKNQLLSVLKISKEKVDECYNAILQRSNGNSYGHNNNIYKRKYEEIPDSPSGVIDAAFGSDGSNDSWAVGSSLYSSPEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5629g00002 396 Gene3D - 117 219 - -
Vium5629g00002 396 CDD CYCLIN_AtCycD-like_rpt1 119 216 - -
Vium5629g00002 396 SMART Cyclin_C_2 221 350 IPR004367 -
Vium5629g00002 396 SUPERFAMILY Cyclin-like 222 331 IPR036915 -
Vium5629g00002 396 ProSitePatterns Cyclins signature. 119 150 IPR006671 -
Vium5629g00002 396 SMART cyclin_7 124 212 IPR013763 -
Vium5629g00002 396 FunFam CYCLIN D32 220 309 - -
Vium5629g00002 396 SUPERFAMILY Cyclin-like 115 219 IPR036915 -
Vium5629g00002 396 FunFam D3-type cyclin 112 219 - -
Vium5629g00002 396 Pfam Cyclin, C-terminal domain 221 331 IPR004367 -
Vium5629g00002 396 PANTHER CYCLINS 50 322 IPR039361 -
Vium5629g00002 396 Pfam Cyclin, N-terminal domain 117 218 IPR006671 -
Vium5629g00002 396 CDD CYCLIN_AtCycD-like_rpt2 221 311 - -
Vium5629g00002 396 MobiDBLite consensus disorder prediction 29 51 - -
Vium5629g00002 396 MobiDBLite consensus disorder prediction 29 46 - -
Vium5629g00002 396 Gene3D - 220 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5629g00002 Vium-Chr5629 10861 13070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5629g00002 1 313 Core Cell Cycle Gene Families AT4G34160 54.313 1.52e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5629g00002 K14505 - gmx:547740 656.751