Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5629g00001 ATGGATTCAGTGCCTGTTAATGTGTCTAATTCACATCCTATCAAAGATCCACCCACTTCTTCTCCTGCTAAAGAGCGTGATGGGCAAGCTTCTGCTGCTTCAGTTTCTGAGCAAGATAATTCAGCACATGAGACACCTTCTATGCCATCCCCACCAGGCATATCGTCTTGGGCCAAAAGCTTGAAAATTTCTCAGTCATTTTCTCGCTCCCAAGATGACTCATCAGGTGGAAATGTTGAGAAATCAACTTTTGCACGTTTCACTAGTAATCTGGGATTGAGGCTGTCTCCAAAGTCTCCTGTATCAGATGACAGTTCCAATGAAACTGCTGTACAATCTAATTTGTTTGGAAGCATTACGAAAGGCCTGGTTGACACTTCTAAGAATGCTGTGAAAGCTGTGCAGGTTAAGGCACGCCATGTTGTTTCCCAGAATAAACGCAGATATCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAGAACATCATTGCAATGGGATTCCCTGCTGGTGACATGAGCTCTGGGTTTTTCGGATATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAGGTTTATAATCTTTGTTCTGAGCGGTTGTACGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCTTTTGATGACCACAATTGCCCGCCAATTCAACTGATTATATCCTTCTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTTGTGGTTGTCCACTGCAAGGCTGGAATGGCTAGGACAGGGTTGATGATTTCTAGTCTTCTATTATTCTTGAAGTTCTTCCCAACGGCTGAGGAGTCGATGGATTACTATAATCAAAAAAGATGTGTTGATGGAAAGGGACTTGTTCTGCCGAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTAACTTACTTCAATGGCGAAAACCCTCCTGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTCCACAGGTGCCCTTACTGGATTAGGCCCTCTGTAACTGTCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCGCGAACCAAGGATCTTATGCCAGAAGATTTTTGGTTCAGTGCACCAAAGAAGGGAGTGATGGTATTTGCTTTGCCAGGAGAGCCCGGTCTTACAGAGTTGTCTGGGGACTTCAAAATTCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACCGAAAATAGAAAAGTATTGAACACTGGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTTATGGTTGAGGTTGTGCTCTTGGACCATAATGCCAATGTAGTAACTTCGCAACCTAAAACTACTTCAACGAAATCAGATGAGAGTTCAAGTAACAGTCCTACTGGTCCTGTGCCAGTAGAAAGGAGCACCCCTTCACAGAATGCAGTCAAAGAATCAGAGAGTCATAATGATAAAGATGATGTGTTTTCAGATGGCGAGGCAGAACAATCTGCTTCTTCAACAACCAAGCAAAAAAACGCACCTTCTGAAGCAGTTGAAACTGTTAAAAATGACACCAGAGGCTCCGACTCCGACAGAATTTCAAATGAAATTTCGAACTTATCGCATGCAACAGAACAAGTTTCTTTGGGAAACAATAGCTCCTCCACGTCAATTCATCACGCTAGTGAGCCAAGAAGTAATGTTGACGGTAAAACAGTGTCCAGTATCGAGGTGCCCAGTGCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATACTTCTGTTTTTACCTTTGGAGATGACGAAGACTACGAAAGTGATTGA 1875 0.4245 MDSVPVNVSNSHPIKDPPTSSPAKERDGQASAASVSEQDNSAHETPSMPSPPGISSWAKSLKISQSFSRSQDDSSGGNVEKSTFARFTSNLGLRLSPKSPVSDDSSNETAVQSNLFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSVTVSDHSGVLFSTKKHPRTKDLMPEDFWFSAPKKGVMVFALPGEPGLTELSGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTGDLDGFDKRKLPSPGFMVEVVLLDHNANVVTSQPKTTSTKSDESSSNSPTGPVPVERSTPSQNAVKESESHNDKDDVFSDGEAEQSASSTTKQKNAPSEAVETVKNDTRGSDSDRISNEISNLSHATEQVSLGNNSSSTSIHHASEPRSNVDGKTVSSIEVPSAESEFKAMAADTSVFTFGDDEDYESD 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5629g00001 624 MobiDBLite consensus disorder prediction 517 539 - -
Vium5629g00001 624 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 300 IPR000387 GO:0016311|GO:0016791
Vium5629g00001 624 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 591 - -
Vium5629g00001 624 MobiDBLite consensus disorder prediction 1 17 - -
Vium5629g00001 624 MobiDBLite consensus disorder prediction 1 59 - -
Vium5629g00001 624 MobiDBLite consensus disorder prediction 466 594 - -
Vium5629g00001 624 MobiDBLite consensus disorder prediction 24 59 - -
Vium5629g00001 624 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Vium5629g00001 624 MobiDBLite consensus disorder prediction 466 501 - -
Vium5629g00001 624 MobiDBLite consensus disorder prediction 502 516 - -
Vium5629g00001 624 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Vium5629g00001 624 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 329 - -
Vium5629g00001 624 MobiDBLite consensus disorder prediction 550 594 - -
Vium5629g00001 624 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Vium5629g00001 624 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Vium5629g00001 624 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Vium5629g00001 624 SMART PTEN_C2_2 331 459 IPR014020 -
Vium5629g00001 624 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5629g00001 Vium-Chr5629 1214 8878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5629g00001 33 624 Protein tyrosine phosphatase (PTP) family AT3G19420 68.204 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5629g00001 K01110 - gmx:100784003 1101.27