Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5626g00005 ATGGCACACCACACCATGGAGGAGGACTTCAACATCTTGGAGATGAACACTGAGCCTTGTAACAACAGCAATGCAACATGTGCAAAGACAGCAGCACCACCACCACAGGAACAGAACAACCTCACATCTTCAACTTTGACAAAGAAGTGTCCATTTCTGGTCACCAAACTTCACTGCCAAAGGCTTAGGAGTTTCACAGCAAATTTGAAAGAGGTTGTTTTCGGCACTAAGCTTGCAGTGCTTTTTCCTGCTGTCCCTTTAGCTGTTGTTGCAGATTTTTATGGCCTTGGAAGGCCTTGGATTTTTGCTCTGAGCCTGCTTGGACTCACCCCTCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTACACTGGCCCCACAGTTGGAGGGCTTCTAAATGCAACCTGTGGTAATGCAACTGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTAAATGTTGTGAAGCTCTCTCTGCTGGGTTCCATTCTTTCAAACCTGCTATTAGTTCTTGGAAGTTCCCTCCTTTTTGGAGGCTTAGCCAACCTAAGGAAGGAGCAAATATATGACAGAAAACAAGCAGATGTAAACTCACTGGTTTTGTTGCTGGGGTTGCTGTGCCATTTGCTGCCATTAATGTTCAGATATGCCTTAGCAGGAGACTATCATTCAATAGCCACTAGCAATCTACAATTATCCAGAGCAAGCAGCATTGTTATGCTTCTAGCATATGCCGGATACATCTTCTTCCAATTAAAAACACATCGACAATTTTTTGATGCACAAGAGGAAGATGAAAACGAAGAAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTTGGCATGACACTTGTCATATCTCTGCTTTCTGAATATGTTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGTTTCATTAGCATAATTTTGTTACCAATTGTGGGAAACGCTGCAGAGCATGCAGGCTCAATCATTTTCGCTTTCAAGAACAAGTTGGACATATCATTAGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGATTCCATTAAGTGTGTTTGTTGCATGGATAATGGGTATAGAAATGGACTTGGATTTCAATCTCCTTGAAACTGGCTGCCTTGCTTTTACAATCATAGTTACAGCATTCACTTTGCAGGATGGAACTTCACACTACATGAAAGGAGTGGTTCTTTTCCTGTGTTACATGATCATTGCTGCATGCTTTTTTGTTCTCAAAACTCCACTAATCAATGAAGCATAG 1314 0.4193 MAHHTMEEDFNILEMNTEPCNNSNATCAKTAAPPPQEQNNLTSSTLTKKCPFLVTKLHCQRLRSFTANLKEVVFGTKLAVLFPAVPLAVVADFYGLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKLSLLGSILSNLLLVLGSSLLFGGLANLRKEQIYDRKQADVNSLVLLLGLLCHLLPLMFRYALAGDYHSIATSNLQLSRASSIVMLLAYAGYIFFQLKTHRQFFDAQEEDENEEEKAVIGFWSAFTWLVGMTLVISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVIPLSVFVAWIMGIEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLFLCYMIIAACFFVLKTPLINEA 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5626g00005 437 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 54 430 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vium5626g00005 437 Pfam Sodium/calcium exchanger protein 284 425 IPR004837 GO:0016020|GO:0055085
Vium5626g00005 437 Pfam Sodium/calcium exchanger protein 100 257 IPR004837 GO:0016020|GO:0055085
Vium5626g00005 437 FunFam Vacuolar cation/proton exchanger 274 428 - -
Vium5626g00005 437 Gene3D - 129 428 IPR044880 -
Vium5626g00005 437 NCBIfam calcium/proton exchanger 83 427 IPR004798 GO:0006816|GO:0015369
Vium5626g00005 437 FunFam Vacuolar cation/proton exchanger 129 273 - -
Vium5626g00005 437 NCBIfam calcium/proton exchanger 64 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5626g00005 Vium-Chr5626 50117 53313 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5626g00005 17 432 Antiporters AT2G38170 65.197 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5626g00005 K07300 - gmx:100778821 687.952