Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5626g00002 ATGGGAAAGTGTTCCTTCAAGGACTCTCTGAAGGCTCTGGAAGCTGATATTCAGTATGCTAATACTCTGGCATTGGACCATCCAAGGGAAAGAGATGGAGGATGCTTTCAGATGAGAATATCTTACAGTCCAGCAGCTCCTATTTTTCTATTTCTTGTTCAGTGGGCTGATTACCGTTTGGCTGGTGCTCTGGGTTTGCTGAGAGTTCTAGTTTATGTGACTTATGGAAATGGGAATAATACCATGTCAATATATGAAAGGAAAGCAAGCATCAGACAATTTTACACTGTTATATTTTCTGCTCTGTTGCAACTTGAGAAAGGCATCACGGATTTGGAGGAAAGGAAACAGAAAGAAGTGGCTCTTAGGTACAAAGGAAAGAGTGGCTTAACGGAGGGAAAACTATCTGATATTGACATTGAAAGAGAAGAGGAATGTGGAGTCTGCTTGGAAGTGACAGCTAAAGTTGTGTTGCCAGATTGCTGCCACCACATGTGTTTGCAGTGCTACAGAGATTGGTGTGAGAGATCTCAGTCTTGCCCCTTTTGCCGGAATAGCCTGAAGAGAATCTATTCCGGGGACCTTTGGATTTACACAGACATGAATGATGTTGTTGATATTGGGACAATTTCCAAAGAGAATTGCAAGAGGCTGTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCCAGATACGTGTTCTATGATCCATTTCTGAGATGA 729 0.4184 MGKCSFKDSLKALEADIQYANTLALDHPRERDGGCFQMRISYSPAAPIFLFLVQWADYRLAGALGLLRVLVYVTYGNGNNTMSIYERKASIRQFYTVIFSALLQLEKGITDLEERKQKEVALRYKGKSGLTEGKLSDIDIEREEECGVCLEVTAKVVLPDCCHHMCLQCYRDWCERSQSCPFCRNSLKRIYSGDLWIYTDMNDVVDIGTISKENCKRLFLYIEKLPLIVPDPRYVFYDPFLR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5626g00002 242 SUPERFAMILY RING/U-box 134 190 - -
Vium5626g00002 242 SMART ring_2 146 183 IPR001841 -
Vium5626g00002 242 PANTHER RING FINGER PROTEIN 41, 151 4 234 - -
Vium5626g00002 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Vium5626g00002 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 205 IPR013083 -
Vium5626g00002 242 FunFam RING/U-box superfamily protein 127 193 - -
Vium5626g00002 242 Pfam Ring finger domain 145 184 IPR001841 -
Vium5626g00002 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5626g00002 Vium-Chr5626 11185 13712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5626g00002 111 187 C3H Transcription Factor Family AT5G41350 31.250 1.30e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5626g00002 - K25840 gmx:100808567 415.231