Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5626g00001 ATGGGGGTTTCATGGGAAGAAAGTGTGACTTATTCCATCAACGCAATCTACCTTCTGTTCTCAGCGTACCTTGTCTTCGTGATGCAAATTGGGTTTGCCATGATATGTGCAGGTTCAGTGCGTGCAAAAAATGCAATGAACATAATGCTCACAAACGTCGTTGATGCAGTCGTCGGTAGCATCTCCTTCTACCTCTTCGGCTTTGCATTTGCATATGGCACTTCTAACCCTTTCATTGGCACTCATCTGTTTGCTCTATCCCACATTCCAAACGCAACTTACGACTATGCTTTCTTCCTTTACCAATGGGCTTTTGCTATAGCTGTAACAGGCATCACGAGTGGATCCATAGCTGAGAGAACTCAATTCAGTGCCTATCTTGTTTTCTCATTTTTCCTCAGTGGCTTTGTGTACCCAGTTGTTGCTCATTGGCTCTGGTCATCCAGTGGTTGGCTCAGTCCAAATTCAACTCACTTGTTCTTGGGTTCAGGAGCCATTGACTTTGCTGGGAGTGGAGTGGTGCATTTGGTTGGCGCAGTTGCTGGTCTTTGGGGGTCCATCATAGAAGGTCCACGGACCGGAAGATTTGATTCTTTAGGCAGGCCCATGCCTCTAAGAGGCCACAGCGCAACACTTGTTGTGCTTGGGACCTTTTTGTTATGGTTTGGATGGTTTGGATTTAATCCAGGATCCTTTGACAAGATCCTTGTGGCTTATCCCGGCACGTCGGACCAAGGTAATTGGACCTCGGTGGGTCGGACTGCCGTGACAACCATATTAGCTGGTTCGACGGCCGGAATAGTTACTTTGTTTGGCCGAAGATTGTTAGTCGGCCACTGGGATGCAATGGATGCGTGCAATGGCTTGCTTGGTGGGTTTGTTGCCATCACGTCCGGATGCTCTGTTGTTGAGCCATGGGCCGCCATTATTTGTGGGTTTGTGTCGGCTTGGGTTTTAATTGGGCTGAACATTGTGGCTCTAAAGTTGAACTATGATGATCCACTGGAGGCAGCCCAATTGCATGGAGGGTGTGGCACTTGGGGTTTGTTGTTTACTGGGTTGTTTGCCAAAGAGGAGTTTGTTATTCAAGTGTATAATTGTGGTGAGATTGGGGTTTCAAGACCCTATGGTGTACTGCTTGGAGGTGGTTGGGGATTGTTTGGAGCCCAAGTGATTGAGATTTTGACAATCTTTGGATGGGTGAGTGTAACAATGGGCCCTATATTCTATGCCTTGCAGAAGCTTGAGATATTGAGAATTCCTGTGAATGAGGAAGTTACTGGGCTTGACATTTCTTGCCATGGAGGGTATGCTTATGCTCAAGAAAACTATCATCTCAGACTTTATGGAGATTACGTGCCTATTCAACATGCCCTATCTTAG 1383 0.4678 MGVSWEESVTYSINAIYLLFSAYLVFVMQIGFAMICAGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGTSNPFIGTHLFALSHIPNATYDYAFFLYQWAFAIAVTGITSGSIAERTQFSAYLVFSFFLSGFVYPVVAHWLWSSSGWLSPNSTHLFLGSGAIDFAGSGVVHLVGAVAGLWGSIIEGPRTGRFDSLGRPMPLRGHSATLVVLGTFLLWFGWFGFNPGSFDKILVAYPGTSDQGNWTSVGRTAVTTILAGSTAGIVTLFGRRLLVGHWDAMDACNGLLGGFVAITSGCSVVEPWAAIICGFVSAWVLIGLNIVALKLNYDDPLEAAQLHGGCGTWGLLFTGLFAKEEFVIQVYNCGEIGVSRPYGVLLGGGWGLFGAQVIEILTIFGWVSVTMGPIFYALQKLEILRIPVNEEVTGLDISCHGGYAYAQENYHLRLYGDYVPIQHALS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5626g00001 460 FunFam Ammonium transporter 2 448 - -
Vium5626g00001 460 Pfam Ammonium Transporter Family 17 439 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vium5626g00001 460 SUPERFAMILY Ammonium transporter 11 420 - -
Vium5626g00001 460 PANTHER AMMONIUM TRANSPORTER 11 435 - -
Vium5626g00001 460 NCBIfam ammonium transporter 14 439 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vium5626g00001 460 ProSitePatterns Ammonium transporters signature. 167 192 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vium5626g00001 460 Gene3D Ammonium transporter AmtB like domains 4 451 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5626g00001 Vium-Chr5626 9133 10566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5626g00001 7 443 Inorganic Solute Cotransporters AT1G64780 64.865 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5626g00001 K03320 - pvy:116129597 765.763