Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5624g00012 ATGTCTTTGCAGTTCTCTGAAATTTCTTCAGTGGATGAACTATCCTTTGGAATCTCTGCGCCGCTTGGCGTGCTGCTAGATGAACTTGTAGAGTTGAAAATGCATTCCAGCAGAATAAAAAGGATTTGGAATGGAAATCAAGATTTTGCAAAGCTGAAGTTCATTGATTTGAGCTATTCTGAAGATCTAATTCAAACCCCAATAGTTTCTGGGGCTCCATCTCTTGAAAGATTGCTTCTTATAAGTTGTGTAAACCTTGTTGAGGTTCACCCATCAGTTGGACAACACAAGAGACTTGTTCTATTGTTGCTGAAAGATTGCAAAAATCTTCAAATCATGCCAAGAAAATTGGAAATGGATTCTTTGGAGGAATTGATTCTCTCTGGCTGCTCAAAAATTGAAAAACTCCCAGAATTTGGAGACAACATGAAATCTTTATCACTGCTTAATGTGGAGAACTGCATAAATCTCCTTTCCCTGCCAAATTCCATTTGCAATTTGAGATCTCTCAGAAAACTCTACGTTTCTGGCTGCTCAAGAATCTCAACACTGCCAGATGGTATGAATGAAAATGAGTCATTGGAGGAGCTTTATGTGAGTGGTACTGACATAAGAGAAATTCCTTCATGTTTAGAAAAACTTAGAGAGCTCTCCTTTGGTGGAAGGAAAGAAACAACACCCAAATCACAAAACTTTCTGCCTCCTCTTTCCAGTTTATTGGCCTTGGAGTCCTTGGATTTAAGTTATGGAGGTCTTACTGATGAATCAATTCCTACTGATCTTGGTCCTTTATCATTGTTGAAGCGTTTAGATCTAAGTGGTAACAATTTTGTTAACCCACCTGCCCAATGCATTATTAGTCTTTCTATGTTCCATACTTTGTCCTTCAATGATTGCCCAAGACTTGAATCCTTGCCATTGCTTCCACCAAATTTACAATCTTTGTACACAACTAATTGTCCTAAATTGAAACCCTTTCACTTGGTTGAAGATACTCTATGGAAGATCTTTGAGTTACATTCACATGAGGATCCGATTGAAGGGCCAGAGCTTTGGTTCATAACACCAGGGAATGAAATTCCATCTTGGTTCAACAATCAAAACTTTCTTGAAATTGATTCATCAGATCAAACGTATGAGAAGTTGTGTTGTGATTCAGTTACTTCAATAACAGTGGATGTATCCGAGGACTTCCAGTTAAGTGAATGGTGGGGAATTGCAGTATGCCTAGTATTAGAACCTTTGAACATGGATGTGCCATCTTCATCTAATGCAAGGTCAACTTCTACTGTCAATGAGGAAATTGGCATTTATTACTGGGTATGTAAAGCTCCTGATAAAGATCCTGACCCAAATTTTCCTATAGCACCCAAGTTTGGGCACAAGCTGTATAAATTCAAGGACCCTTACATCATATTATATTCTTGA 1428 0.3824 MSLQFSEISSVDELSFGISAPLGVLLDELVELKMHSSRIKRIWNGNQDFAKLKFIDLSYSEDLIQTPIVSGAPSLERLLLISCVNLVEVHPSVGQHKRLVLLLLKDCKNLQIMPRKLEMDSLEELILSGCSKIEKLPEFGDNMKSLSLLNVENCINLLSLPNSICNLRSLRKLYVSGCSRISTLPDGMNENESLEELYVSGTDIREIPSCLEKLRELSFGGRKETTPKSQNFLPPLSSLLALESLDLSYGGLTDESIPTDLGPLSLLKRLDLSGNNFVNPPAQCIISLSMFHTLSFNDCPRLESLPLLPPNLQSLYTTNCPKLKPFHLVEDTLWKIFELHSHEDPIEGPELWFITPGNEIPSWFNNQNFLEIDSSDQTYEKLCCDSVTSITVDVSEDFQLSEWWGIAVCLVLEPLNMDVPSSSNARSTSTVNEEIGIYYWVCKAPDKDPDPNFPIAPKFGHKLYKFKDPYIILYS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5624g00012 475 Gene3D Ribonuclease Inhibitor 119 190 IPR032675 -
Vium5624g00012 475 Gene3D Ribonuclease Inhibitor 2 118 IPR032675 -
Vium5624g00012 475 Gene3D Ribonuclease Inhibitor 191 391 IPR032675 -
Vium5624g00012 475 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 121 329 - -
Vium5624g00012 475 SUPERFAMILY L domain-like 24 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5624g00012 Vium-Chr5624 37572 39650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5624g00012 27 268 WRKY Transcription Factor Family AT4G12020 32.394 1.65e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5624g00012 - - vum:124841261 933.324