Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5624g00011 ATGTTACGTGGAGAATCTTCCTCAAGTTCTTCTGATGAATCTTCGCGGTGGAGCTACCATGTTTATTTGAGTTTTGGAATGGAAGGCACTCACGTAGATTTTGCTAACACCTTATGTGTTTCGTTGCAGCGAAAGGGAATCTTAACTTTCAGATATGATAAGCTAGTTGAGAGAGATGTGATGTTGAAAAAAGTTCAGAAGGCAATGGAGGAGTACCTTGTTGCCATTGTCCTTCTCTCCGAGAATTTTGCCGCCTCCACTTGGTGTTTGGAGGAACTTCGAAAGATTCTTGATGTGGGAAAACCAGTCATTCCTGTGTTTTATGAAGTCGTTCCTTCCGATGTTCGGCACCAGAGAAATAGTTTCGCTAAGGCTTTCGAAGAACATGAAAGAAGATTAGAAGAAGATCAATTGAAGGTGCAACAATGGAGGAAATCCTTGAAAGAAGTTGTGGACTTTTCTGGCTGGGAGTCCAAGGATAGGGGAAGGGAAGAACTCATTGAAGACATTATTAAATCGGTATGGACAAAAATACGTCTTAAATTGCCATCATACGAGGAGGAAAGGGTTGGAATTGATTCAAGAGTTGAGAAAATACGTTCACTTTTGAAGCTGGAATTGAAAGACGTGGTTCACTTCACTGGAATATGGGGCATGGGTGGTATAGGAAAGACAACTCTAGCGAGAGTTGTATTTAAGAAAATATGTAGCCAATTTGATATTAGTTGCTTCCTTGAAAATGTGAGAGAGATTTCTGGGAAAACTCATGACATGCTTACCTTACAAATAACACTTCTCTCTCATATGGAAGTGAAAGAATTCACAATCCAAAATTTGGATGAAGGAAAGATCGTAATAGGAGGTATCTTACGCAACAACAAAGTTCTCCTGGTCCTTGATGATGTTGATGACGCAAGACAACTGGACAGTTTGGGTGTGAATGATCAAGGGAAGTTTGGCCCTGGGAGCAGGATTATAGTAACAACAAGAGACATGGAAGTACTAAAACCACTTGGAAATTTTGAAATTTGTAAAATTGATCTGTTAAACTCTGATGAATCCCTTCAACTTTTTTGTCATAAAGCATTTAAAAGAGATAAACCACCAGAACAACTATTGCAGTTGTCAAAAGTGGCTGTTCAACAAGCTGGAGGCCTTCCTCTGGCCCTTGAGATGATGGGTTCATCCTTCTTTGGGAGAAACGAATCTCAGTGGAAAGAACTTTTAGATATGAAAGAATACTCAAAGAAAGATATTGTGATGGAGAAACTTACAATAAGCTATCATGGGTTACCAGAAACAAATGGAATTGATGTACTAATTGGTAAATCACTGAAAAAAGAATCGATTCAGGGTATAGTTTTGAAGTCGTCCACTGAGCCATACATTGCAAATTGGGATCCCGAAGCCTTCTCAAAGATGTACAATCTCAAATTCCTTATAATTAATTTTCACAATATACAATTTCCCCATGGCCTCAAATGTCTTAGCAGTTCACTGGAAGTTCTTCAGTGGACAAAGTGTACTTTGGAAGCTCTGCCGCTTGGCGTTAAGCTTGAGAAACTTGTAGTGTTAAAAATGCGTTACAGCAAAATAAAGAAGATCTGGAGTGATTCTCAACATTTCAAAAGGTTGAAGTTCATTGATCTTAGCCATTCTGAAGATCTAATTGAAAGTCCTATAGTTTCTGAGGTTCCATGTCTTGAAATTTTGCTTCTTGAAGGTTGTAAAAACCTTGTCAAGAAATCAGAAAATCTTATCTGCCTACCAAAGTCTGTTTGCTATGTCAGTGGGACAAAAGTTCGTTTAGAAAATCTTAAAGAGCTTTCTTTTGGTGGAGGAAAAGAACTAACATCCAACTCATCAATATGTAGGAAGAAACTAGTTTCGAAGGAATTAATCTTGCCTCCTCTTTCTAGTTTAACAAGCCTCAAGTTCTTGAATTTAAGTTACTGTGACCTTAATGATGAATCAATGCCAGGTGAACTTGGATCCCTATCATCTTTGTTGGGCTTAGATCTAAGCGGTAACAATTTTGTTAGACCTACTTACTGCATTAGAAATCTTCATGCCTTGAAGAGTTTGACCTTAATTGATTGCCCAAGGCTTGAGTCTTTGCCAATGCTCCCACCAAACGTTCAATGTTTGTGTACAGCTAACAGTACTCAAACGAAACCCTTGAATTCAGATGCATATATGCTATGGAAGATCTTTGAGTTGCACATGAATCAGGGGCAGATTTTAGAACTCTTTGAACATAAATTGAACTGTTTTTGTCCGAGGGTGCATGTCAAGGCTTCAATGTTAAGTGGAGAATCTTCCTCAAACTCTTCGAGATGGACATACCATGATTTTTTGAGTTTTCGAGGACAAGACACGCGCTTAGGTTTTACAGATCACTTGTACGCTGCGTTGGTGAGAAAGGGAATGATAACTTTCCGAGATGACAAAAATCTAGAGAAAGGAGATAAGATAGATAAAGAACTATTTAAAGCAATTAAAGAGTCCCTCGGGGCCATTGTGATTCTCTCTGAGAACTATGCCTCTTCCTCTTGGTGTTTGGGGCTCAACAAAATTCTGGAATCAAATAAAGCTCTGGGGAGAAAAGTTTTCCCAGTTTTCTGTGGGGTTAGTCCTAGTGAGGTTCAACACCAGACAACAAAGAGTTTTGAAGAGGCTTTTCAGAAACATGAAAGAAGATTTGAGAAAGACACAGAAAAGGTGCAACAATGGAGAGATTCCTTGAAGGAGGTTAGCCAAATTGCTGGCTGGGAGTCCGAAAATTACCAGCATCAAACGGAGCTCATTGAAAACATTGTTGAATCGGTATGGACAAAGCTACGTCCTGAAATGCCATCTTTCAATGATGGGTTAGTTGGAATTGTCTCAAGGGTTAAGAAAATGGACTCACTTTTAAGGATAGAATCGAAGGATGACGCTCGCTTTATCGGAATATGGGTGGGTGGCATTGGAAAGACAACCCTAGCGAGAGTTGTCTTCGGGAAAATCCAGCACCATTTTGATATTAGCTGCTTCCTTGACAACGTTCGAGAGATTTCAAAAGAAAGTGGTGGCAGGCTTCGTTTACAAGGAAAACTCCTTTCTCATCTGGGTATAAAAGGCTTAGAAATTAGAGATTTAGACGAGGGAAAGAACACAATAAGAGAACTTCTATTCAAGAAGAAAGTTCTTCTTGTCATTGATGATGTTGATGATACTAGCCAACTAGAGAGTTTGGCTGAGAGGTTAGAGTGGTTTGGCCCCGGGAGCAGAGTTATAATAACAACAAGAGACACACACGTCCTAATATCACATGGAATAGTTGAAAACTACAAAATTGACATCTTAAATTCTGACGAATCCCTTCAACTCTTGAGCCAGAAAGCCTTTAAAAGAGATAAACCTGATGAACATTATTTGGAGTTGTCAAAAGTTCTTGCCAAATATGCAGGAGGCCTCCCTTTGGCCTTGGAGCTGTTAGGTTCATTTCTGTGTGGAAGAAGTGAATCCCAATGGAAAGTAGTGGATATGATAAAGGAAGTGCCCCCGAGTCATATTGCGATGAAATCGCTTAGAATAAGCTACAATGGGTTGCCGCTACGTTATAAAACTTTGTTTCTTGATATTGCATGTTTCTTCAAAGGGAGGATAAAAGAGCTTGTGATACAAGCTCTAGAAATTTGTGAGCGTTATCCACCAGTTGGAATTGACCTTCTGGTTGAAAAATCACTGGCAACTTATGATGGCTTTACCATAGGGATGCATGATTTGCTTCAAGAATCAGCAAAGGGAAATTGTCAAAGAAGAAAGTTATGTGGATCCGGCAAAACGAAGTAG 3837 0.3935 MLRGESSSSSSDESSRWSYHVYLSFGMEGTHVDFANTLCVSLQRKGILTFRYDKLVERDVMLKKVQKAMEEYLVAIVLLSENFAASTWCLEELRKILDVGKPVIPVFYEVVPSDVRHQRNSFAKAFEEHERRLEEDQLKVQQWRKSLKEVVDFSGWESKDRGREELIEDIIKSVWTKIRLKLPSYEEERVGIDSRVEKIRSLLKLELKDVVHFTGIWGMGGIGKTTLARVVFKKICSQFDISCFLENVREISGKTHDMLTLQITLLSHMEVKEFTIQNLDEGKIVIGGILRNNKVLLVLDDVDDARQLDSLGVNDQGKFGPGSRIIVTTRDMEVLKPLGNFEICKIDLLNSDESLQLFCHKAFKRDKPPEQLLQLSKVAVQQAGGLPLALEMMGSSFFGRNESQWKELLDMKEYSKKDIVMEKLTISYHGLPETNGIDVLIGKSLKKESIQGIVLKSSTEPYIANWDPEAFSKMYNLKFLIINFHNIQFPHGLKCLSSSLEVLQWTKCTLEALPLGVKLEKLVVLKMRYSKIKKIWSDSQHFKRLKFIDLSHSEDLIESPIVSEVPCLEILLLEGCKNLVKKSENLICLPKSVCYVSGTKVRLENLKELSFGGGKELTSNSSICRKKLVSKELILPPLSSLTSLKFLNLSYCDLNDESMPGELGSLSSLLGLDLSGNNFVRPTYCIRNLHALKSLTLIDCPRLESLPMLPPNVQCLCTANSTQTKPLNSDAYMLWKIFELHMNQGQILELFEHKLNCFCPRVHVKASMLSGESSSNSSRWTYHDFLSFRGQDTRLGFTDHLYAALVRKGMITFRDDKNLEKGDKIDKELFKAIKESLGAIVILSENYASSSWCLDXLNKILESNKALGRKVFPVFCGVSPSEVQHQTTKSFEEAFQKHERRFEKDTEKVQQWRDSLKEVSQIAGWESENYQHQTELIENIVESVWTKLRPEMPSFNDGLVGIVSRVKKMDSLLRIESKDDARFIGIWAXGGIGKTTLARVVFGKIQHHFDISCFLDNVREISKESGGRLRLQGKLLSHLGIKGLEIRDLDEGKNTIRELLFKKKVLLVIDDVDDTSQLESLAERLEWFGPGSRVIITTRDTHVLISHGIVENYKIDILNSDESLQLLSQKAFKRDKPDEHYLELSKVLAKYAGGLPLALELLGSFLCGRSESQWKVVDMIKEVPPSHIAMKSLRISYNGLPLRYKTLFLDIACFFKGRIKELVIQALEICERYPPVGIDLLVEKSLATYDGFTIGMHDLLQESAKGNCQRRKLCGSGKTK 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5624g00011 1280 SUPERFAMILY L domain-like 463 749 - -
Vium5624g00011 1280 Gene3D - 179 342 IPR027417 -
Vium5624g00011 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 949 1211 IPR027417 -
Vium5624g00011 1280 FunFam Disease resistance protein (TIR-NBS-LRR class) 778 950 - -
Vium5624g00011 1280 Gene3D - 950 1109 IPR027417 -
Vium5624g00011 1280 ProSiteProfiles TIR domain profile. 780 948 IPR000157 GO:0007165
Vium5624g00011 1280 Pfam NB-ARC domain 196 410 IPR002182 GO:0043531
Vium5624g00011 1280 Pfam NB-ARC domain 978 1177 IPR002182 GO:0043531
Vium5624g00011 1280 SMART till_3 18 153 IPR000157 GO:0007165
Vium5624g00011 1280 SMART till_3 781 922 IPR000157 GO:0007165
Vium5624g00011 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 434 IPR027417 -
Vium5624g00011 1280 Gene3D - 12 178 IPR035897 -
Vium5624g00011 1280 Gene3D - 775 949 IPR035897 -
Vium5624g00011 1280 SUPERFAMILY Toll/Interleukin receptor TIR domain 773 925 IPR035897 -
Vium5624g00011 1280 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 783 1267 IPR044974 GO:0006952
Vium5624g00011 1280 ProSiteProfiles TIR domain profile. 17 182 IPR000157 GO:0007165
Vium5624g00011 1280 Gene3D Ribonuclease Inhibitor 587 744 IPR032675 -
Vium5624g00011 1280 Pfam TIR domain 782 957 IPR000157 GO:0007165
Vium5624g00011 1280 Pfam TIR domain 19 184 IPR000157 GO:0007165
Vium5624g00011 1280 Gene3D - 348 432 IPR042197 -
Vium5624g00011 1280 Gene3D - 1117 1201 IPR042197 -
Vium5624g00011 1280 Coils Coil 126 146 - -
Vium5624g00011 1280 PRINTS Disease resistance protein signature 540 556 - -
Vium5624g00011 1280 PRINTS Disease resistance protein signature 289 303 - -
Vium5624g00011 1280 PRINTS Disease resistance protein signature 383 397 - -
Vium5624g00011 1280 PRINTS Disease resistance protein signature 213 228 - -
Vium5624g00011 1280 Pfam Leucine Rich Repeat 521 540 IPR011713 -
Vium5624g00011 1280 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 156 IPR035897 -
Vium5624g00011 1280 Gene3D Ribonuclease Inhibitor 443 586 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5624g00011 Vium-Chr5624 30660 37716 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5624g00011 448 714 WRKY Transcription Factor Family AT5G45050 26.871 4.23e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5624g00011 - - vum:124841260 2466.42