Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5612g00002 ATGCAGCTGAAAACTCAGTTTTTCTTCTACTTCTGTTGCATGTGCTGTTTCTCATATGGATTTGCGGCTGCAGCAAATGATGAAGCGTCTGCTTTACTTTCTATAAAAGCAGGTCTTATTGATCCACTGAATAGCCTGCTTGATTGGAAATTGTTGGTAAAAGCAAAAGGGAAGGATGCAGCTCATTGTAACTGGACTGGTGTCCAGTGCAACTCAGCTGGAGAAGTGGATAGCCTTGATCTCTCCCGCATGAATCTGAGTGGCATTTTGTCCAGTGAGATACAAAGGCTAAAGAGTCTTACTTCTCTCAACTTGTGTTGCAACGAATTTTCCTCTTCATTATCATCCATAGCCAATCTCACCACACTCAAGACTCTTGATGTGAGCCAGAATTTCTTCACTGGTGACTTTCCGTTAGGCCTTGGAAAGGCATTGGGACTTACGACCTTAAATGCATCCAGCAACAATTTCTCTGGCTTTCTTCCTGAGGATCTGGGAAATGTCTCTTCCTTGGAGACTTTAGATTTCAGAGGCAGCTTCTTTGAAGGGTCAGTTCCAAAATCCTTCAGTAACTTGCACAGGCTGAAGTTCCTCGGTTTATCTGGGAATAATCTCACTGGAGAAATCCCTGGAGAGTTGGGCCAACTTTCATCACTGGAGTGCTTGATCCTTGGATATAATGAATTTGAAGGTGGTATTCCAGCTGAGTTTGGAAATCTCACCATGTTAAAGTATCTTGATTTAGCAGAAGGCAATCTTGGTGGTGAAATTCCAGCCGAGTTGGGAAAGCTCAAACTGTTGAATACAGTTTTCTTGTACAAAAACAAATTAGAAGGCAAGATTCCACCGACAATTGGCACCATGACTTCATTGGTGCAGCTGGATCTGTCAGACAACATGTTATCAGGAAATATACCGGCTGAAATAAGTCAGCTGAAGAATTTACAGCTTCTGAACTTAATGCGCAACCGGCTATCTGGTCCTGTGCCTTCTGGCCTTGGAGACTTGCCTCAACTTGAGGTGCTTGAGCTATGGAACAATTCCTTGTCAGGGTCATTGCCTAGAAACCTTGGCAAGAATTCACCGTTGCTGTGGTTGGATGTATCATCTAATTTGCTTTCCGGTGAGATTCCAGAAACTCTTTGCACCAAAGGCTATCTCACCAAGCTCATACTTTTCAATAATGCCTTCATGGGTCCAATTCCGGCAAGCCTATCAACATGTCCTTCAATTGTCCGTGTTCGAATTCAGAACAATTTTCTTTCTGGGACAATACCTGTGGGCCTTGGTAAGCTTAGGAAGCTTCAGAGGTTAGAATTAGCAAACAATAGTCTCACTGGTGGAATTCCTAATGACATTGGTTCTTCTACATCCCTTTCTTTCATTGATTTTTCCACAAACAATCTCCACTCTTCTCTTCCTTCAAACATTCTTTCCATTTCAAATCTGCAAACTTTAATTGTCTCGAACAATAACTTGAGAGGTGAAATCCCAGACGAATTCCAGGATTGTCCCTCACTAGGTGTCCTTGATCTCTCACGAAATGAACTCTCTGGAGGCATTCCAGCAAGCCTTGCATCATGCCAGAAATTGGTAAACTTGAACCTACAGAATAACCAATTAACGGGTGAAATCCCAAAAGCATTAGCAAGCATGCCTACATTAGCCATTCTTGATCTTGCCAACAACTCTCTGAGTGGTCAAATACCTGGAAACTTTGGTAGCTCTCCAGCTTTGGAAACATTCAACGTCTCGCACAACAAGTTAAAAGGTCCTGTCCCAGAAAACGGAGTGCTAAGAACAATAAACCCAAATGATCTTGCGGGGAATGCTGGCTTGTGTGGTGCTGTCCTCCCCCCATGTGTCCAAATCTCTGCATATCCGTTAAGGCGTGGGAATTCATATCCAAAGCACATTATTGTAGGATGGATCATTGGAATATCATCTATACTAGCCATTGGGGTTACGACTGTGGTAGCAAGATCTTTATACATAAGGTGGTACACTGAGGGATTGTGCTTCCAGGAAAGATTTTATAAGGGTAGGAAGGGGTGGCCATGGAGATTGATGGCCTTTCAGAGGCTTGATTTTACAAGTAGTGACATTTTATCTTGCATTAAGGATACAAATATGATTGGTATGGGAGCGACTGGGGTTGTCTACAAGGCTGAGATACCACAATCTAGTACAATCGTGGCTGTCAAGAAGTTGTGGAGATCAGGATCTGATATCGAAGTAGGAAGCAGTGATGACCTTGTTGGTGAGGTGAATCTTTTAGGGAGGTTAAGGCATAGGAACATTGTTAGACTACTGGGATTTCTTTACAATGACGCTGATGTGATGATAGTTTATGAATTTATGCACAATGGAAACCTTGGAGATGCTCTGCATGGTAAACAAGCTGGGAGATTACTTGTAGACTGGGTTTCCCGATATAACATAGCTCTAGGAATTGCAGAAGGACTTGTTTATCTTCATCATGATTGTCATCCACCTGTTATCCATCGAGACATAAAGTCAAATAATATACTGCTTGATGCAAATCTTGATGCAAGGATAGCAGATTTTGGGTTGGCTAAGATGATGCTCCGGAAGAATGAAACAGTCTCCATGATTGCTGGATCTTATGGATACATTGCCCCTGAATATGGATACTCCTTGAAAGTGGATGAAAAGATTGACATTTACAGTTATGGAGTGGTTCTGTTGGAGCTTCTGACTGGAAAGCGGCCCTTAGAACCCGAGTTTGGAGAATCTATAGACATAGTAGGGTGGATCAGAAGGAAGATAGACAAAAAATCTGCACATGAAGCATTAGACCCGAGTGTAGGAAACTGCAAGTATGTTCAAGAAGAGATGATTTTAGTTCTCAAGATAGCACTTCTATGCACTGCCAAGTTCCCCAAGGACAGACCCTCCATGAGGGATGTTAGAATGATGCTTGGAGAGGCAAAGCCTAGGAGAAAAAGTGGCAGGAGCAGTGAAACAATTTCAGCTAACAAGGAAATGCCAGCTAATATTAGCACACCGGCAGTTAATGGCCTTCTTTAG 3051 0.4261 MQLKTQFFFYFCCMCCFSYGFAAAANDEASALLSIKAGLIDPLNSLLDWKLLVKAKGKDAAHCNWTGVQCNSAGEVDSLDLSRMNLSGILSSEIQRLKSLTSLNLCCNEFSSSLSSIANLTTLKTLDVSQNFFTGDFPLGLGKALGLTTLNASSNNFSGFLPEDLGNVSSLETLDFRGSFFEGSVPKSFSNLHRLKFLGLSGNNLTGEIPGELGQLSSLECLILGYNEFEGGIPAEFGNLTMLKYLDLAEGNLGGEIPAELGKLKLLNTVFLYKNKLEGKIPPTIGTMTSLVQLDLSDNMLSGNIPAEISQLKNLQLLNLMRNRLSGPVPSGLGDLPQLEVLELWNNSLSGSLPRNLGKNSPLLWLDVSSNLLSGEIPETLCTKGYLTKLILFNNAFMGPIPASLSTCPSIVRVRIQNNFLSGTIPVGLGKLRKLQRLELANNSLTGGIPNDIGSSTSLSFIDFSTNNLHSSLPSNILSISNLQTLIVSNNNLRGEIPDEFQDCPSLGVLDLSRNELSGGIPASLASCQKLVNLNLQNNQLTGEIPKALASMPTLAILDLANNSLSGQIPGNFGSSPALETFNVSHNKLKGPVPENGVLRTINPNDLAGNAGLCGAVLPPCVQISAYPLRRGNSYPKHIIVGWIIGISSILAIGVTTVVARSLYIRWYTEGLCFQERFYKGRKGWPWRLMAFQRLDFTSSDILSCIKDTNMIGMGATGVVYKAEIPQSSTIVAVKKLWRSGSDIEVGSSDDLVGEVNLLGRLRHRNIVRLLGFLYNDADVMIVYEFMHNGNLGDALHGKQAGRLLVDWVSRYNIALGIAEGLVYLHHDCHPPVIHRDIKSNNILLDANLDARIADFGLAKMMLRKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSYGVVLLELLTGKRPLEPEFGESIDIVGWIRRKIDKKSAHEALDPSVGNCKYVQEEMILVLKIALLCTAKFPKDRPSMRDVRMMLGEAKPRRKSGRSSETISANKEMPANISTPAVNGLL 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5612g00002 1016 MobiDBLite consensus disorder prediction 981 995 - -
Vium5612g00002 1016 SMART LRR_typ_2 288 312 IPR003591 -
Vium5612g00002 1016 SMART LRR_typ_2 97 120 IPR003591 -
Vium5612g00002 1016 SMART LRR_typ_2 480 503 IPR003591 -
Vium5612g00002 1016 SMART LRR_typ_2 336 360 IPR003591 -
Vium5612g00002 1016 SMART LRR_typ_2 432 456 IPR003591 -
Vium5612g00002 1016 SMART LRR_typ_2 552 576 IPR003591 -
Vium5612g00002 1016 SMART LRR_typ_2 192 216 IPR003591 -
Vium5612g00002 1016 Pfam Leucine Rich Repeat 434 454 IPR001611 GO:0005515
Vium5612g00002 1016 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 25 179 - -
Vium5612g00002 1016 SUPERFAMILY L domain-like 59 354 - -
Vium5612g00002 1016 Gene3D Transferase(Phosphotransferase) domain 1 791 1006 - -
Vium5612g00002 1016 FunFam MDIS1-interacting receptor like kinase 1 791 1000 - -
Vium5612g00002 1016 ProSiteProfiles Protein kinase domain profile. 706 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5612g00002 1016 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 272 981 - -
Vium5612g00002 1016 FunFam MDIS1-interacting receptor like kinase 1 706 790 - -
Vium5612g00002 1016 Gene3D Ribonuclease Inhibitor 24 177 IPR032675 -
Vium5612g00002 1016 Gene3D Ribonuclease Inhibitor 178 274 IPR032675 -
Vium5612g00002 1016 Gene3D Phosphorylase Kinase; domain 1 706 790 - -
Vium5612g00002 1016 SMART serkin_6 706 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5612g00002 1016 FunFam Leucine-rich repeat receptor protein kinase EMS1 281 364 - -
Vium5612g00002 1016 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 180 280 - -
Vium5612g00002 1016 MobiDBLite consensus disorder prediction 981 1004 - -
Vium5612g00002 1016 SUPERFAMILY Protein kinase-like (PK-like) 701 981 IPR011009 -
Vium5612g00002 1016 SUPERFAMILY RNI-like 281 591 - -
Vium5612g00002 1016 ProSitePatterns Protein kinases ATP-binding region signature. 712 736 IPR017441 GO:0005524
Vium5612g00002 1016 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Vium5612g00002 1016 Gene3D Ribonuclease Inhibitor 383 625 IPR032675 -
Vium5612g00002 1016 Pfam Leucine rich repeat N-terminal domain 25 71 IPR013210 -
Vium5612g00002 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Vium5612g00002 1016 Pfam Protein kinase domain 708 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5612g00002 1016 Gene3D Ribonuclease Inhibitor 275 382 IPR032675 -
Vium5612g00002 1016 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 365 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5612g00002 Vium-Chr5612 9043 12946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5612g00002 7 990 Receptor kinase-like Gene Family AT1G08590 60.718 0.0 1150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium5612g00002 Pkinase 6.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5612g00002 - - gmx:100788430 1766.51