Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5612g00001 ATGTCAACTGTGTCCAAAGATGACAACTTGGTGCTGTCTTCGGAGGACTCTTCTTGCCCAGAAGAGTCTGAGATCGAATTGGGTCTTGGGTTGAGCATCTCAGGCCCTTCTAAGTCTTACCACCATGTCCACGCTCATGCTCCTTCTTCTTATGCTAGGATTTTCACTGCCAGGGCTTTTCCTTCTTCACCATCACCATCACCATCACCTTCCTCTTCTTCCTCTTCCTCTCCCAACATCACTGCTGGCACCAAGAGAGCTGCTGAATCTCTTGTTGCAAATAATCGTCCCGGTCAAGTAGTTGGATGGCCTCCACTTCGGACGTATAGAGTGAATAGCTACAATATCCATGCAAAATCAACAGAAGTATTCAACTCAGTGCCTGAGAAGAGTAAAGGCAACAATACTGTGGTAAGGAAAAGTGCTGACAATGGCAATGGTAACAACATTAATGCCAAAGAAAAAAGACAGCTCAGGAGTTCCCTGTTCGTCAAGGTAAATATGGATGGAATACCTATTGGGAGGAAGGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCACAAACGTTGGAGGACATGTTTAACGAATCAACCACAGTCACCACTTGCAAAGGAGCAAATGGTGAGGATCATGGAATTATTATTGGAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTACGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCTTGGGGGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATAATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTCGAAGAAAACATCAGACAGAAATGCAAGCCCATATAG 864 0.4479 MSTVSKDDNLVLSSEDSSCPEESEIELGLGLSISGPSKSYHHVHAHAPSSYARIFTARAFPSSPSPSPSPSSSSSSSPNITAGTKRAAESLVANNRPGQVVGWPPLRTYRVNSYNIHAKSTEVFNSVPEKSKGNNTVVRKSADNGNGNNINAKEKRQLRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGANGEDHGIIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRFEENIRQKCKPI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5612g00001 287 MobiDBLite consensus disorder prediction 61 93 - -
Vium5612g00001 287 MobiDBLite consensus disorder prediction 69 84 - -
Vium5612g00001 287 Pfam AUX/IAA family 78 275 IPR033389 -
Vium5612g00001 287 MobiDBLite consensus disorder prediction 127 151 - -
Vium5612g00001 287 FunFam Auxin-responsive protein 156 276 - -
Vium5612g00001 287 MobiDBLite consensus disorder prediction 1 18 - -
Vium5612g00001 287 MobiDBLite consensus disorder prediction 1 23 - -
Vium5612g00001 287 Gene3D - 156 277 - -
Vium5612g00001 287 ProSiteProfiles PB1 domain profile. 161 268 IPR000270 GO:0005515
Vium5612g00001 287 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 271 IPR003311 GO:0005634|GO:0006355
Vium5612g00001 287 SUPERFAMILY CAD & PB1 domains 156 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5612g00001 Vium-Chr5612 3024 8744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5612g00001 154 275 B3 DNA Binding Superfamily AT1G59750 34.426 1.46e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vium5612g00001 AUX_IAA 1.7e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5612g00001 K14484 - gmx:100779400 462.996