Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5610g00001 AGGGTAGTGCCAATCACAGGTGATGCCACAAATGACGCACCTGCTCTAAAACATGTAGATATTGGACTTTCCAAGGGAATAGAAGGCACTGAATTGGAAAAGGAGAGCTTTGGTAGAGTTGAGCCACTAGTAACTACACTTATGTGGAGGAACCTGATTTCACAGGCATTGTACCAGGTTATTGTACAACTGGTTTTAGAATTGAGGGGAAGATCAATCTTTCATGTTACTGACAAGGTGAAGAACACGATTATCTTAAATTCTTTTGTCCTCTGTCAAGTGTTCAATGAGTTAAATGGAAGGGAACTGGAGAACAAGAACATATTTAAGGGAGTTGGTAAGCATAGGTTGTTCATTGTAATTGTGAGCCTAACTGTTGTTCTTGAGGTAGTGAAGGTTGAGTTTCTGAAAAAGATAGCCAATACTGAGAGATTGACTTGGGAGCAATGGGGTGTTTGTGTTAGAATTCCAGCTTTGTCTTGGACAATTGGTGTGCTGGTGAAGTGTAACCCACTTGTTCACAAGAAAAATTAG 534 0.4026 RVVPITGDATNDAPALKHVDIGLSKGIEGTELEKESFGRVEPLVTTLMWRNLISQALYQVIVQLVLELRGRSIFHVTDKVKNTIILNSFVLCQVFNELNGRELENKNIFKGVGKHRLFIVIVSLTVVLEVVKVEFLKKIANTERLTWEQWGVCVRIPALSWTIGVLVKCNPLVHKKN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5610g00001 177 Pfam Cation transporting ATPase, C-terminus 38 168 IPR006068 -
Vium5610g00001 177 Gene3D - 2 32 IPR023214 -
Vium5610g00001 177 SUPERFAMILY Calcium ATPase, transmembrane domain M 41 173 IPR023298 -
Vium5610g00001 177 Gene3D - 33 174 - -
Vium5610g00001 177 PANTHER CATION TRANSPORTING ATPASE 2 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5610g00001 Vium-Chr5610 20485 21071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5610g00001 2 36 Primary Pumps ATPases AT3G22910 74.286 1.68e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5610g00001 K01537 - vum:124841228 333.954