Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium560g00003 ATGGCATCAACATCTGGCGTTGGTAACAGCTCAATACTCATCAAAGATGTAGCTTCAAACTTTCGTGCATATCCTCCTCCTCTAGCAAAATATGAGGAAGTTGTAGACAATTCCCAGCTCTTCATGTTTACCTTGGAGAAGCTTCACGCATCTATGGGTACCAAATACATGATTCCTACTGTTGGAGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTGACTTCCCGGGGAGGGATTGCAAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTCAATTTTCCGTCAACAGCCACAAATGCTTCTTTTGTGTTGAGGAAGTACTATGCTTCACTGCTTTACCATTATGAACAAATCTACTATTTTAAATCCCGGGAATGGGACCCTACTGCTCCTGATGTTTTGCAGAACCAATCAACCCTGGCAGTTCCTCCTCCAAAAATTCAGTTTCCACAGTCTTTGCCAGAAATTCAACCAGCCGTCTTTCAACAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAATGACAACATCTTCGGCTGGATCTCCAGTCATTGGGGTCATTGACGGGAAATTTGAAAGTGGCTATCTAGTTACTGTCACGATTGGTTCAGAGAAACTCAAAGGAGTACTTTATCAAGCTCCACAGAATCCTATACTGCACGCATCCCATCATAGTGCCCCAGCTAATAATACCAACGCTTCTTCTTCAGTGGGTGTTCATCGTCGGAGACGCAGGAAGAAATCAGAAATAAAAAGAAGAGATCCTGCTCATCCAAAACCTAACAGAAGTGGGTACAATTTCTTCTTTGCTGAACAGCATGCAAGACTAAAGGCACTTCACCATGGAAAAGACAGAGAGATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTAAAAGAATCAGAAAAGACGGTTTATCAAGAGAAAGCCATGAAAGATAAAGAGAGGTACAGAGCAGAAATGGAGTATTATAGAGAGAAACTGAAGATGGGTCAAGTTATCAGTGACGCTGTGCCCCTTCAGCAACGACTTCCTGAAGCAGATGCAGACATGTTGGATGTTGACTTAAAAACGGATGAAGCTGAGGCAGATTCGCTTCAAACTCCAGAGGAGAGTAGTTCCGGTGGAAGTGATTATGAAGATTATAATAATACTGCAGAAAGAGGTTTTGATATTGATTCATTACCTGTAATAGGAATGGGTGCAGAAACAAGCTATTTGGGTTCGGAAGATAAGTCATCCAAAGGGGGTTTTTGA 1278 0.4171 MASTSGVGNSSILIKDVASNFRAYPPPLAKYEEVVDNSQLFMFTLEKLHASMGTKYMIPTVGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKSREWDPTAPDVLQNQSTLAVPPPKIQFPQSLPEIQPAVFQQSNVNAAKLPEAMTTSSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPILHASHHSAPANNTNASSSVGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKALHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEYYREKLKMGQVISDAVPLQQRLPEADADMLDVDLKTDEAEADSLQTPEESSSGGSDYEDYNNTAERGFDIDSLPVIGMGAETSYLGSEDKSSKGGF 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium560g00003 425 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Vium560g00003 425 CDD HMG-box_AtHMGB9-like 265 331 - -
Vium560g00003 425 Coils Coil 314 334 - -
Vium560g00003 425 MobiDBLite consensus disorder prediction 227 244 - -
Vium560g00003 425 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Vium560g00003 425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Vium560g00003 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 379 - -
Vium560g00003 425 MobiDBLite consensus disorder prediction 245 259 - -
Vium560g00003 425 Gene3D - 25 136 IPR036431 GO:0003677
Vium560g00003 425 SMART bright_3 36 127 IPR001606 GO:0003677
Vium560g00003 425 MobiDBLite consensus disorder prediction 367 397 - -
Vium560g00003 425 MobiDBLite consensus disorder prediction 227 272 - -
Vium560g00003 425 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Vium560g00003 425 Gene3D High mobility group box domain 249 343 IPR036910 -
Vium560g00003 425 SMART ARID_2 32 122 - -
Vium560g00003 425 FunFam High mobility group B protein 15 247 342 - -
Vium560g00003 425 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Vium560g00003 425 MobiDBLite consensus disorder prediction 374 388 - -
Vium560g00003 425 FunFam High mobility group B protein 15 29 142 - -
Vium560g00003 425 SUPERFAMILY ARID-like 35 134 IPR036431 GO:0003677
Vium560g00003 425 SUPERFAMILY HMG-box 253 336 IPR036910 -
Vium560g00003 425 SMART hmgende2 264 333 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium560g00003 Vium-Chr560 9391 15275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium560g00003 1 363 ARID Transcription Factor Family AT1G04880 60.000 3.69e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium560g00003 ARID 2.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium560g00003 - - gmx:100783284 710.679