Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium560g00002 ATGGCATCAACATCTGGCGTTGGTAACAGCTCAATACTCATCAAAGATGTAGCTTCAAACTTTCGTGCATATCCTCCTCCTCTAGCAAAATATGAGGAAGTTGTAGACAATTCCCAGCTCTTCATGTTTACCTTGGAGAAGCTTCACGCATCTATGGGTACCAAATACATGATTCCTACTGTTGGAGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTGACTTCCCGGGGAGGGATTGCAAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTCAATTTTCCGTCAACAGCCACAAATGCTTCTTTTGTGTTGAGGAAGTACTATGCTTCACTGCTTTACCATTATGAACAAATCTACTATTTTAAATCCCGGGAATGGGACCCTACTGCTCCTGATGTTTTGCAGAACCAATCAACCCTGGCAGTTCCTCCTCCAAAAATTCAGTTTCCACAGTCTTTGCCAGAAATTCAACCAGCCGTCTTTCAACAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGGTGCCACGACGTGGTTTACCAGAAGCAGATCTAGTGTTTTATCTCCTTTTGAGATTTATGTTCCATGA 606 0.4175 MASTSGVGNSSILIKDVASNFRAYPPPLAKYEEVVDNSQLFMFTLEKLHASMGTKYMIPTVGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKSREWDPTAPDVLQNQSTLAVPPPKIQFPQSLPEIQPAVFQQSNVNAAKLPEGATTWFTRSRSSVLSPFEIYVP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium560g00002 201 FunFam High mobility group B protein 15 29 143 - -
Vium560g00002 201 SUPERFAMILY ARID-like 35 134 IPR036431 GO:0003677
Vium560g00002 201 Gene3D - 21 137 IPR036431 GO:0003677
Vium560g00002 201 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Vium560g00002 201 SMART ARID_2 32 122 - -
Vium560g00002 201 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Vium560g00002 201 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Vium560g00002 201 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 173 - -
Vium560g00002 201 SMART bright_3 36 127 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium560g00002 Vium-Chr560 4231 7734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium560g00002 1 144 ARID Transcription Factor Family AT1G04880 55.556 7.69e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium560g00002 ARID 5.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium560g00002 - - gmx:100783284 314.694