Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5607g00003 ATGATGCTCGGAGAGCACCATCGAGCGAATCCAACCGTCCACGTCCCACCGTGGCCAACCAACGATGATCCAATGGCTGAGATGTACTCTTCTTTTTTATCAAACGACGTCAATGCTGCCGAGTACTCTCCCTACTATATTCAAGAAGCGTTAACGGCGCTGCAGCGTTATCTTCCTGCCAACGAGACTGACGCTGACTCGGACACCGAGGCTCAACCCGACGCGCCGGTGGACGCGTACTCCTGCGACCATTTTCGCATGTACGAGTTCAAGGTCCGTAGATGCGCTCGTGGCAGGTCGCACGACTGGACCGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCTCGCCGCCGAGACCCTCGCAAGTACCATTATTCCGGCGCGGCATGCCCTGAGTTCCGCAAGGGGAGTTGCAAGAAAGGTGATACGTGCGAGTTCGCGCACGGCGTCTTCGAGTGCTGGCTACACCCTGCGCGCTACCGCACGCAGCCGTGCAAGGACGGAACCAGTTGCCGCCGGCGCGTGTGCTTCTTTGCGCACACTCCGGAACAGCTGCGTCTCGTTCCGATGCAGAGTCCTCGCAGCTCGGGGGATTCGTATGACGGTTCTCCGATGAGACAGGTTCTGCAGTCTTCGGCGTTCATGTCGTCTCCGGCTGCTTCTCTTTCTCCACCGGAGTCTCCACCCGTGTCACCTTCTATGAACGAGATGGTGGCTTCTCTGCGTAATCTGCAGCTTGGTAAGATGAAATCGATGCCACATAACAGAAACGTTTCTGTCGGGTCTCCGGGTTACGGGTCACCAAGAGGTTCCGTACTTCGACCCGGGTTCTGTAGTCTACCCACAACACCAACTCAGCAACCGGGTCGGTCTGGGGTGAACTATTTGGATATTTGGGAGCGAAGTGTTGAGGAGGAGCCAGTGATGGAGAGGGTGGAGTCTGGAAGGGGCATAAGGGCAAAGATGTTTGAGAAGCTGAGCAAAGAGAACTCCCTGGAGGGATCGGGTCAGGGAAGTGGAGCTCCGGATGTTGGGTGGGTTTCGGAGCTTGTGAAGTGA 1059 0.5722 MMLGEHHRANPTVHVPPWPTNDDPMAEMYSSFLSNDVNAAEYSPYYIQEALTALQRYLPANETDADSDTEAQPDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGAACPEFRKGSCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPMQSPRSSGDSYDGSPMRQVLQSSAFMSSPAASLSPPESPPVSPSMNEMVASLRNLQLGKMKSMPHNRNVSVGSPGYGSPRGSVLRPGFCSLPTTPTQQPGRSGVNYLDIWERSVEEEPVMERVESGRGIRAKMFEKLSKENSLEGSGQGSGAPDVGWVSELVK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5607g00003 352 FunFam Zinc finger CCCH domain-containing protein 66 82 150 - -
Vium5607g00003 352 PANTHER UNKEMPT FAMILY MEMBER 48 352 IPR045234 -
Vium5607g00003 352 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Vium5607g00003 352 MobiDBLite consensus disorder prediction 328 352 - -
Vium5607g00003 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Vium5607g00003 352 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Vium5607g00003 352 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Vium5607g00003 352 Gene3D - 121 195 - -
Vium5607g00003 352 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5607g00003 Vium-Chr5607 9666 11166 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5607g00003 73 258 C2H2 Transcription Factor Family AT5G12850 49.758 3.76e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium5607g00003 zf-CCCH 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5607g00003 - - gmx:100778184 646.736