Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5607g00002 ATGGGAAGGGCTCCTTGCTGTGACAAATCTATCGTGAAAAAAGGGCCATGGTCTCCTGATGAAGATGTCACCCTCAGAAACTACCTTGAGAAACATGGCACTGCTGGAAATTGGATAGCTCTCCCCAAGAAAGCAGGGCTTAAACGTTGTGGAAAGAGCTGTCGTCTGAGATGGCTGAACTATCTCAGGCCTCATATAAAGCTTGGAGGTTTCACTGAAGAGGAAGACAAAATTATCTGCACCCTTTATGGCAATATTGGAAGCAGGTGGTCCCTCATAGCAGCTCAACTGCCCGGAAGAACAGACAATGATGTCAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTTCTAGGAGGAAACACTGGTAGTAGTACTGTTGCCACAAGCTACAACAATGGCACTGTCAGCGGTGCTACTTCTTCTGACCAATTCTCATCTTCTACTATTCAACCTCAAGTTGATGCCTTTGTCTTGAATCAGAAACTGAACTCAGCTTGGTTTGACTCCTACAATAATCTGAATCTGGAACAAACACCAATTTCAGTTCCTCTTCCAATGCCTCAGGAATTAGTATCGTTTAATTATAGTGCACCACCCTCTAATGAAATTTCATTGCCAACTTTCAATGCAGCTTCATTAGCACAGCAGAATGAAGATATACAATGGTTTGGCTATGAATATGCAGAGGAAAATGATCCAAATTTACTTGCTTTTGTGCTTGATGATCTGCTGATGAATCATGGGTCAGCATCTTCTGATCACATTGCTTCGTCATGTGTGGATAACCAAGACTCGTTCTACTCATCAAAAGCTTGA 819 0.4225 MGRAPCCDKSIVKKGPWSPDEDVTLRNYLEKHGTAGNWIALPKKAGLKRCGKSCRLRWLNYLRPHIKLGGFTEEEDKIICTLYGNIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLGGNTGSSTVATSYNNGTVSGATSSDQFSSSTIQPQVDAFVLNQKLNSAWFDSYNNLNLEQTPISVPLPMPQELVSFNYSAPPSNEISLPTFNAASLAQQNEDIQWFGYEYAEENDPNLLAFVLDDLLMNHGSASSDHIASSCVDNQDSFYSSKA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5607g00002 272 CDD SANT 71 113 IPR001005 -
Vium5607g00002 272 FunFam Transcription factor RAX3 7 68 - -
Vium5607g00002 272 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium5607g00002 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vium5607g00002 272 PANTHER OS09G0431300 PROTEIN 1 185 - -
Vium5607g00002 272 CDD SANT 16 62 IPR001005 -
Vium5607g00002 272 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Vium5607g00002 272 SMART sant 13 64 IPR001005 -
Vium5607g00002 272 SMART sant 67 115 IPR001005 -
Vium5607g00002 272 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vium5607g00002 272 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vium5607g00002 272 Gene3D - 7 68 - -
Vium5607g00002 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium5607g00002 272 Gene3D - 70 135 - -
Vium5607g00002 272 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5607g00002 Vium-Chr5607 3558 5282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5607g00002 1 173 MYB Transcription Factor Family AT5G57620 60.674 8.28e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5607g00002 Myb_DNA-binding 6.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5607g00002 K09422 - gmx:778160 358.221