Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium5604g00001 | ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAACAACAAAATCAACATCAGGCAAATGGCAGTAACAGTCCTCAGATGCTTCCCACCATGCCTCAACACCCACAGGATCCTCACGTCGGAGTTCATGAAGCTGCAGGCTCAATCCGGCCCGGTTTGATGGCGGATCGGTCTAAGATTCCGGCCCAGGAAGGAGCTCTCAAGTGTCCTCGCTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCGCGGCACTTTTGCAAGACTTGTAGGCGTTATTGGACAAGAGGTGGCGCTCTCAGGAACGTTCCTGTCGGTGGAGGATGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCGGTTCCTACTGAGAAATCATCACTTCCCAATCCCACAAACGCTATGCCTGAGCTTATTGGTCGATTCCCACAACCTTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGCAGGGAACGCTGGTGTTAACTTGCGTGAGATGCAAGCTCAGAACGGTTCGCATATGGGGTTTCAAATTGGTGGTCAGGGTCATGGTTCAAGTGTTACTGCTGCTGGAGGAGGATTGGAACAGTGGCGGTTTCAGCAATTTCCTTTCTTGAATGGTTTTGACTCAGCTTCTGCTGTTTCTTCCTACCCTTTTCAAACTGAAAGTGTTGAAGGTCTGGTTGGAGATATTGCCGCAAGTTCTAGGGTTACTCAGCTGCCACCACGAGTTAAATTGGAATACAACGGTGGTTTGAATTTGTCGAGATCTCCTTTGAGTGTGTCAGAAAATAGTAACCATTACTACTCATGGACGGATTTATCCGGTCTTGCATCTTCTTCCGCTAGTCATCTCTTGTAA | 912 | 0.4792 | MVFSSIPVYLDPPNWQQQQNQHQANGSNSPQMLPTMPQHPQDPHVGVHEAAGSIRPGLMADRSKIPAQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVPTEKSSLPNPTNAMPELIGRFPQPFMASLQSMNRYGAGNAGVNLREMQAQNGSHMGFQIGGQGHGSSVTAAGGGLEQWRFQQFPFLNGFDSASAVSSYPFQTESVEGLVGDIAASSRVTQLPPRVKLEYNGGLNLSRSPLSVSENSNHYYSWTDLSGLASSSASHLL | 303 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium5604g00001 | 303 | MobiDBLite | consensus disorder prediction | 116 | 152 | - | - | |
Vium5604g00001 | 303 | Pfam | Dof domain, zinc finger | 71 | 126 | IPR003851 | GO:0003677|GO:0006355 | |
Vium5604g00001 | 303 | MobiDBLite | consensus disorder prediction | 12 | 35 | - | - | |
Vium5604g00001 | 303 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 39 | 201 | IPR045174 | GO:0003700|GO:0006355 | |
Vium5604g00001 | 303 | MobiDBLite | consensus disorder prediction | 12 | 48 | - | - | |
Vium5604g00001 | 303 | ProSitePatterns | Zinc finger Dof-type signature. | 74 | 110 | IPR003851 | GO:0003677|GO:0006355 | |
Vium5604g00001 | 303 | ProSiteProfiles | Zinc finger Dof-type profile. | 72 | 126 | IPR003851 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium5604g00001 | Vium-Chr5604 | 11156 | 12885 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium5604g00001 | 8 | 222 | C2C2-Dof Transcription Factor Family | AT3G55370 | 40.664 | 5.67e-45 | 154 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Vium5604g00001 | zf-Dof | 2.5e-32 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium5604g00001 | - | - | gmx:100775899 | 479.559 |