Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5604g00001 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAACAACAAAATCAACATCAGGCAAATGGCAGTAACAGTCCTCAGATGCTTCCCACCATGCCTCAACACCCACAGGATCCTCACGTCGGAGTTCATGAAGCTGCAGGCTCAATCCGGCCCGGTTTGATGGCGGATCGGTCTAAGATTCCGGCCCAGGAAGGAGCTCTCAAGTGTCCTCGCTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCGCGGCACTTTTGCAAGACTTGTAGGCGTTATTGGACAAGAGGTGGCGCTCTCAGGAACGTTCCTGTCGGTGGAGGATGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCGGTTCCTACTGAGAAATCATCACTTCCCAATCCCACAAACGCTATGCCTGAGCTTATTGGTCGATTCCCACAACCTTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGCAGGGAACGCTGGTGTTAACTTGCGTGAGATGCAAGCTCAGAACGGTTCGCATATGGGGTTTCAAATTGGTGGTCAGGGTCATGGTTCAAGTGTTACTGCTGCTGGAGGAGGATTGGAACAGTGGCGGTTTCAGCAATTTCCTTTCTTGAATGGTTTTGACTCAGCTTCTGCTGTTTCTTCCTACCCTTTTCAAACTGAAAGTGTTGAAGGTCTGGTTGGAGATATTGCCGCAAGTTCTAGGGTTACTCAGCTGCCACCACGAGTTAAATTGGAATACAACGGTGGTTTGAATTTGTCGAGATCTCCTTTGAGTGTGTCAGAAAATAGTAACCATTACTACTCATGGACGGATTTATCCGGTCTTGCATCTTCTTCCGCTAGTCATCTCTTGTAA 912 0.4792 MVFSSIPVYLDPPNWQQQQNQHQANGSNSPQMLPTMPQHPQDPHVGVHEAAGSIRPGLMADRSKIPAQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVPTEKSSLPNPTNAMPELIGRFPQPFMASLQSMNRYGAGNAGVNLREMQAQNGSHMGFQIGGQGHGSSVTAAGGGLEQWRFQQFPFLNGFDSASAVSSYPFQTESVEGLVGDIAASSRVTQLPPRVKLEYNGGLNLSRSPLSVSENSNHYYSWTDLSGLASSSASHLL 303
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium5604g00001 303 MobiDBLite consensus disorder prediction 116 152 - -
Vium5604g00001 303 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Vium5604g00001 303 MobiDBLite consensus disorder prediction 12 35 - -
Vium5604g00001 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 201 IPR045174 GO:0003700|GO:0006355
Vium5604g00001 303 MobiDBLite consensus disorder prediction 12 48 - -
Vium5604g00001 303 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Vium5604g00001 303 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium5604g00001 Vium-Chr5604 11156 12885 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5604g00001 8 222 C2C2-Dof Transcription Factor Family AT3G55370 40.664 5.67e-45 154
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium5604g00001 zf-Dof 2.5e-32 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5604g00001 - - gmx:100775899 479.559