Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5603g00016 ATGCCACACACCCTTTTTCACACTTTCTTTACACCACCTTCTTCTTCTTATGTGCTACCCTTCAAACTGTACAAACCCCAAGTGAAACGATTCGTTTTACATTTCGGGCTTCCACGGCGTTCCCGCACATCTCCAGAACCTTCATCATCTTCTTCTTTCACTCCGCAGAGGAAAACTAGGGAGGTGGTTGAAGAACGGATTAATGGAGAAGAATCTGTTTACCCTCAAAAAGGTGATGGTTTAGTGGATGAAGAAGATAACGAAAGGCTTGGAAAATCGTGTGAAGTGTACGTGTGCAACCTCCCCAGAAGCTGTGATGCAGCATACTTGCTTGACTTGTTCAGGCCATATGGGACCATTCTATCGGTTGAGGTTTGCCGAAATGATGAGACTAATGAAAGTAAGGGTTGTGGTTACGTGACACTGGGATCTGTATACTCAGCAAGAAATGCAGTTGCTACATTGGATGGATCAGATGTTGATGGGCGCGAAATGAGGGTTAGATTTTCAATTGAGGTGAATTCTAGAAGGAGGGGTTTTAATAAAGCGAACTCTTCCACCAAGAGGATCTTATACTATGAATCTTCTCATAAGCTGTATGTTGGCAATCTTCCTAAGACAATGAGACCTGAACAGCTGAGAGATCACTTTAGCAGATTTGGAAATATAGTTGGTGCCAGAGTATTGCTTGATTTTAAACAAGGGAAAAGTCGAGCCTATGCCTTTCTCTCCTTTCAATTAGAGGCGGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTTTATGGCCGAACACTAATAGTTAAAGAGGGTGTTGAGAGGACAGAGCCTTTAACTGAAGCTTAA 849 0.4276 MPHTLFHTFFTPPSSSYVLPFKLYKPQVKRFVLHFGLPRRSRTSPEPSSSSSFTPQRKTREVVEERINGEESVYPQKGDGLVDEEDNERLGKSCEVYVCNLPRSCDAAYLLDLFRPYGTILSVEVCRNDETNESKGCGYVTLGSVYSARNAVATLDGSDVDGREMRVRFSIEVNSRRRGFNKANSSTKRILYYESSHKLYVGNLPKTMRPEQLRDHFSRFGNIVGARVLLDFKQGKSRAYAFLSFQLEAERDAAMSLNGTEFYGRTLIVKEGVERTEPLTEA 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5603g00016 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Vium5603g00016 282 SUPERFAMILY RNA-binding domain, RBD 89 181 IPR035979 GO:0003676
Vium5603g00016 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Vium5603g00016 282 PANTHER OS02G0815200 PROTEIN 42 270 - -
Vium5603g00016 282 SMART rrm1_1 198 270 IPR000504 GO:0003723
Vium5603g00016 282 SMART rrm1_1 95 168 IPR000504 GO:0003723
Vium5603g00016 282 SUPERFAMILY RNA-binding domain, RBD 194 276 IPR035979 GO:0003676
Vium5603g00016 282 MobiDBLite consensus disorder prediction 42 57 - -
Vium5603g00016 282 Gene3D - 176 278 IPR012677 -
Vium5603g00016 282 Gene3D - 38 175 IPR012677 -
Vium5603g00016 282 MobiDBLite consensus disorder prediction 39 61 - -
Vium5603g00016 282 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 46 177 - -
Vium5603g00016 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Vium5603g00016 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 267 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5603g00016 Vium-Chr5603 87470 89516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5603g00016 81 277 Eukaryotic Initiation Factors Gene Family AT1G22760 31.313 5.08e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5603g00016 - - vra:106780336 513.842