Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5603g00015 ATGCAGTTACACAGTTTTCTTTTCCATGTAGTTATTGCGGTTCCAGACGGATTAAAGGCATGGGAGTTGTTGAAGAAGAACGCGTCCGAGCTAGATCTCATAATAACTGAAGTGGATCTGCCAGCAATATCTGGATTTGCCCTTCTTTCTTTAATCATGGAACATGAAATTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCTGTAAGCATGGTGTTGAAATGCATGCTAAAAGGGGCTGCTGATTTTCTTATAAAACCTATTCGGAGGAATGAACTAGGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTAGTAGCACTACTGCTCCAATTACAACATTTTCACCAAAAAATCTTGAAACTGCCTCCGAAGACAATTCTGCAAGCAATAAATCTAGTGGTTCCGTTGCCTCCTCTAAGGAAAACAACGAATACAGTGAGAGATTAAGTGAGGCTCAAGATGTGCCCCAGCTGAAAAGGTCTAAACAGCAGAAAATTGATTTGAAGTATGAAAAGTTTACCAGATTTGAAAGTGAATCAACTAAGATGGATAATGAAACAAGAGATAATTCAATTATAATTGTATCAGACACTGCAGGGTGCGACAAAACTTTTGAATCGGCAGATTTAAGGCTAGAACAAGACCATGGCTGTGCTGATACTGAAATTGAGGTTGAAATCTTAAAATCTGATTTAGGCATAGGAGATTCTAATATTAGTTCTGAGTTGCATGGATGCAGTGATGAAGGGGTGAAACCTATTAAAGGAGCTATTGACTTGATTGCAACATTTGGAAATCTTCCAAAGCACCCTGATGAAAACTGTAGTCTTAATGGTGGTAATACAACCATGTTTTATGGTGTTACGCAATTGGAACTTTCTTTAAGAAGTGATTTTCCTGGAAGTTCATGTAAACAAGCAAGCGAAGCAACTGAGGAATCTCAAAGATTGAACCATTCAAACACCTCTGCGTTTTCTTGGTATAGTAATAGTAAATTGGTGCACCCTCTTTTTCGAACACCATCAATTACATCCGCCGAAGTAAACAACCCCAGTTGGGATTCTCACGAATCCCATAAATTGTCTCGAACTACTTCTGGAAATTGTTGTCAGTATGGTGGCTCAAATAAAAACCTGGAGAATATGATCGGTACGGTCATTGATCAGTATGGACAAGTTAAGCCAAAATTATCAAACAGTCAATGTGGAATGTTACCTGTTTCAGGGGTTGTTTCCGATCTTAAGTCCAAGGGACATGGTAATGTTTTCACTTCAGTGTTCTACGCAACATCTGGTACTCACCCTGTGTGGAGTCCGAAACCAGTCTGCCAGAACGAGAGTTCTCCCTTTCCCACAAGTACCTCCTCCCAGTCCAATCCTGAAAGTCACAACTCTGACCAATATCATGAATATTCCAATGATGCTACATGTCTTAATCAAAATGTAAAGGAAGACACTGATTTGGATCAGGCAAGGCGTGATTCTCCTGCTGCTGATCAGAGTGCTGGTAATAGTTTATGCCATGATGCTTCATATCATGTCAACAGTAGTGCGTATGGAAGCATGGACAGTGGAAATGATGGGCATGCTACTTCAGCTATAGTATCCAAGAACAACCCAGAAGTTTTCAGCGATAGTGTTTGTCATAATTATGATGGGTCTCGAGGCACAGAATCTCATCACACTAGTCAAAGAGAAGCAGCTCTAACCAAGTTTCGACTGAAGCGGAAAGAGCGATGCTTCGAGAAAAAGGTTCGATATCAAAGCCGGAAAAGGCTGGCAGAGCAGCGTCCTCGGGTCAAAGGGCAGTTTGTTCGCCAAGTACACAATGATCGTCCAGTTGCTGATGCCGGTGGTGATTCATGA 1878 0.41 MQLHSFLFHVVIAVPDGLKAWELLKKNASELDLIITEVDLPAISGFALLSLIMEHEICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPIRRNELGNLWQHVWRRHASSTTAPITTFSPKNLETASEDNSASNKSSGSVASSKENNEYSERLSEAQDVPQLKRSKQQKIDLKYEKFTRFESESTKMDNETRDNSIIIVSDTAGCDKTFESADLRLEQDHGCADTEIEVEILKSDLGIGDSNISSELHGCSDEGVKPIKGAIDLIATFGNLPKHPDENCSLNGGNTTMFYGVTQLELSLRSDFPGSSCKQASEATEESQRLNHSNTSAFSWYSNSKLVHPLFRTPSITSAEVNNPSWDSHESHKLSRTTSGNCCQYGGSNKNLENMIGTVIDQYGQVKPKLSNSQCGMLPVSGVVSDLKSKGHGNVFTSVFYATSGTHPVWSPKPVCQNESSPFPTSTSSQSNPESHNSDQYHEYSNDATCLNQNVKEDTDLDQARRDSPAADQSAGNSLCHDASYHVNSSAYGSMDSGNDGHATSAIVSKNNPEVFSDSVCHNYDGSRGTESHHTSQREAALTKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDRPVADAGGDS 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5603g00015 625 ProSiteProfiles Response regulatory domain profile. 1 104 IPR001789 GO:0000160
Vium5603g00015 625 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 315 IPR045279 GO:0009736
Vium5603g00015 625 Pfam CCT motif 569 611 IPR010402 GO:0005515
Vium5603g00015 625 Gene3D - 1 213 - -
Vium5603g00015 625 MobiDBLite consensus disorder prediction 115 167 - -
Vium5603g00015 625 Pfam Response regulator receiver domain 8 96 IPR001789 GO:0000160
Vium5603g00015 625 MobiDBLite consensus disorder prediction 115 147 - -
Vium5603g00015 625 MobiDBLite consensus disorder prediction 594 625 - -
Vium5603g00015 625 SUPERFAMILY CheY-like 4 110 IPR011006 -
Vium5603g00015 625 MobiDBLite consensus disorder prediction 148 167 - -
Vium5603g00015 625 MobiDBLite consensus disorder prediction 558 572 - -
Vium5603g00015 625 MobiDBLite consensus disorder prediction 594 610 - -
Vium5603g00015 625 MobiDBLite consensus disorder prediction 443 473 - -
Vium5603g00015 625 ProSiteProfiles CCT domain profile. 569 611 IPR010402 GO:0005515
Vium5603g00015 625 SMART REC_2 1 100 IPR001789 GO:0000160
Vium5603g00015 625 MobiDBLite consensus disorder prediction 550 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5603g00015 Vium-Chr5603 77361 82766 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5603g00015 532 613 Response Regulator Gene Family AT5G24470 54.878 8.99e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vium5603g00015 Response_reg 1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5603g00015 K12130 - gmx:100791698 897.116