Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5603g00014 ATGGCTGAGTTGAGTAGTACGATGCAAGAGCACGGGACGGGCAACAATGGCGATCGCTCTGCAGAGGGGGTTCAGTGGGAGAGGTTTCTGCCGCGGATGGTGCTCAGAGTCCTGCTTGTAGAAGCTGATCATTCCACTCGACAAATAATCGCTGCGCTTCTTCGCAAATGCAGTTACACAGTTATTGCGGTTCCAGACGGATTAAAGGCATGGGAGTTGTTGAAGAAGAACGCGTCCGAGCTAGATCTCATAATAACTGAAGTGGATCTGCCAGCAATATCTGGATTTGCCCTTCTTTCTTTAATCATGGAACATGAAATTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCTGTAAGCATGGTGTTGAAATGCATGCTAAAAGGGGCTGCTGATTTTCTTATAAAACCTATTCGGAGGAATGAACTAGGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTAGTAGCACTACTGCTCCAATTACAACATTTTCACCAAAAAATCTTGAAACTGCCTCCGAAGACAATTCTGCAAGCAATAAATCTAGTGGTTCCGTTGCCTCCTCTAAGGAAAACAACGAATACAGTGAGAGATTAAGTGAGGCTCAAGATGTGCCCCAGCTGAAAAGGTCTAAACAGCAGAAAATTGATTTGAAGTATGAAAAGTTTACCAGATTTGAAAGTGAATCAACTAAGATGGATAATGAAACAAGAGATAATTCAATTATAATTGTATCAGACACTGCAGGGTGCGACAAAACTTTTGAATCGGCAGATTTAAGGCTAGAACAAGACCATGGCTGTGCTGATACTGAAATTGAGGTTGAAATCTTAAAATCTGATTTAGGCATAGGAGATTCTAATATTAGTTCTGAGTTGCATGGATGCAGTGATGAAGGGGTGAAACCTATTAAAGGAGCTATTGACTTGATTGCAACATTTGGAAATCTTCCAAAGCACCCTGATGAAAACTGTAGTCTTAATGGTGGTAATACAACCATGTTTTATGGTGTTACGCAATTGGAACTTTCTTTAAGAAGTGATTTTCCTGGAAGTTCATGTAAACAAGCAAGCGAAGCAACTGAGGAATCTCAAAGATTGAACCATTCAAACACCTCTGCGTTTTCTTGGTATAGTAATAGTAAATTGGTGCACCCTCTTTTTCGAACACCATCAATTACATCCGCCGAAGTAAACAACCCCAGTTGGGATTCTCACGAATCCCATAAATTGTCTCGAACTACTTCTGGAAATTGTTGTCAGTATGGTGGCTCAAATAAAAACCTGGAGAATATGATCGGTACGGTCATTGATCAGTATGGACAAGTTAAGCCAAAATTATCAAACAGTCAATGTGGAATGTTACCTGTTTCAGGGGTTGTTTCCGATCTTAAGTCCAAGGGACATGGTAATGTTTTCACTTCAGTGTTCTACGCAACATCTGGTACTCACCCTGTGTGGAGTCCGAAACCAGTCTGCCAGAACGAGAGTTCTCCCTTTCCCACAAGTACCTCCTCCCAGTCCAATCCTGAAAGTCACAACTCTGACCAATATCATGAATATTCCAATGATGCTACATGTCTTAATCAAAATGTAAAGGAAGACACTGATTTGGATCAGGCAAGGCGTGATTCTCCTGCTGCTGATCAGAGTGCTGGTAATAGTTTATGCCATGATGCTTCATATCATGTCAACAGTAGTGCGTATGGAAGCATGGACAGTGGAAATGATGGGCATGCTACTTCAGCTATAGTATCCAAGAACAACCCAGAAGTTTTCAGCGATAGTGTTTGTCATAATTATGATGGGTCTCGAGGCACAGAATCTCATCACACTAGTCAAAGAGAAGCAGCTCTAACCAAGTTTCGACTGAAGCGGAAAGAGCGATGCTTCGAGAAAAAGGTTCGATATCAAAGCCGGAAAAGGCTGGCAGAGCAGCGTCCTCGGGTCAAAGGGCAGTTTGTTCGCCAAGTACACAATGATCGTCCAGTTGCTGATGCCGGTGGTGATTCATGA 2028 0.4221 MAELSSTMQEHGTGNNGDRSAEGVQWERFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWELLKKNASELDLIITEVDLPAISGFALLSLIMEHEICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPIRRNELGNLWQHVWRRHASSTTAPITTFSPKNLETASEDNSASNKSSGSVASSKENNEYSERLSEAQDVPQLKRSKQQKIDLKYEKFTRFESESTKMDNETRDNSIIIVSDTAGCDKTFESADLRLEQDHGCADTEIEVEILKSDLGIGDSNISSELHGCSDEGVKPIKGAIDLIATFGNLPKHPDENCSLNGGNTTMFYGVTQLELSLRSDFPGSSCKQASEATEESQRLNHSNTSAFSWYSNSKLVHPLFRTPSITSAEVNNPSWDSHESHKLSRTTSGNCCQYGGSNKNLENMIGTVIDQYGQVKPKLSNSQCGMLPVSGVVSDLKSKGHGNVFTSVFYATSGTHPVWSPKPVCQNESSPFPTSTSSQSNPESHNSDQYHEYSNDATCLNQNVKEDTDLDQARRDSPAADQSAGNSLCHDASYHVNSSAYGSMDSGNDGHATSAIVSKNNPEVFSDSVCHNYDGSRGTESHHTSQREAALTKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDRPVADAGGDS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5603g00014 675 CDD psREC_PRR 37 140 - -
Vium5603g00014 675 MobiDBLite consensus disorder prediction 1 20 - -
Vium5603g00014 675 MobiDBLite consensus disorder prediction 198 217 - -
Vium5603g00014 675 MobiDBLite consensus disorder prediction 608 622 - -
Vium5603g00014 675 Gene3D - 33 262 - -
Vium5603g00014 675 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Vium5603g00014 675 MobiDBLite consensus disorder prediction 493 523 - -
Vium5603g00014 675 MobiDBLite consensus disorder prediction 600 622 - -
Vium5603g00014 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 339 IPR045279 GO:0009736
Vium5603g00014 675 SMART REC_2 35 150 IPR001789 GO:0000160
Vium5603g00014 675 Pfam Response regulator receiver domain 37 146 IPR001789 GO:0000160
Vium5603g00014 675 ProSiteProfiles CCT domain profile. 619 661 IPR010402 GO:0005515
Vium5603g00014 675 SUPERFAMILY CheY-like 35 160 IPR011006 -
Vium5603g00014 675 MobiDBLite consensus disorder prediction 165 217 - -
Vium5603g00014 675 Pfam CCT motif 619 661 IPR010402 GO:0005515
Vium5603g00014 675 MobiDBLite consensus disorder prediction 165 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5603g00014 Vium-Chr5603 77361 83165 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5603g00014 582 663 Response Regulator Gene Family AT5G24470 54.878 1.13e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vium5603g00014 Response_reg 4.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5603g00014 K12130 - gmx:100791698 970.304