Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5603g00012 ATGGCTGAGTTGAGTAGTACGATGCAAGAGCACGGGACGGGCAACAATGGCGATCGCTCTGCAGAGGGGGTTCAGTGGGAGAGGTTTCTGCCGCGGATGGTGCTCAGAGTCCTGCTTGTAGAAGCTGATCATTCCACTCGACAAATAATCGCTGCGCTTCTTCGCAAATGCAGTTACACAGTTATTGCGGTTCCAGACGGATTAAAGGCATGGGAGTTGTTGAAGAAGAACGCGTCCGAGCTAGATCTCATAATAACTGAAGTGGATCTGCCAGCAATATCTGGATTTGCCCTTCTTTCTTTAATCATGGAACATGAAATTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCTGTAAGCATGGTGTTGAAATGCATGCTAAAAGGGGCTGCTGATTTTCTTATAAAACCTATTCGGAGGAATGAACTAGGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTAGTAGCACTACTGCTCCAATTACAACATTTTCACCAAAAAATCTTGAAACTGCCTCCGAAGACAATTCTGCAAGCAATAAATCTAGTGGTTCCGTTGCCTCCTCTAAGGAAAACAACGAATACAGTGAGAGATTAAGTGAGGCTCAAGATGTGCCCCAGCTGAAAAGGTCTAAACAGCAGAAAATTGATTTGAAGTATGAAAAGTTTACCAGATTTGAAAGTGAATCAACTAAGATGGATAATGAAACAAGAGACACTGCAGGGTGCGACAAAACTTTTGAATCGGCAGATTTAAGGCTAGAACAAGACCATGGCTGTGCTGATACTGAAATTGAGGTTGAAATCTTAAAATCTGATTTAGGCATAGGAGATTCTAATATTAGTTCTGAGTTGCATGGATGCAGTGATGAAGGGGTGAAACCTATTAAAGGAGCTATTGACTTGATTGCAACATTTGGAAATCTTCCAAAGCACCCTGATGAAAACTGTAGTCTTAATGGTGGTAATACAACCATGTTTTATGGTGTTACGCAATTGGAACTTTCTTTAAGAAGTGATTTTCCTGGAAGTTCATGTAAACAAGCAAGCGAAGCAACTGAGGAATCTCAAAGATTGAACCATTCAAACACCTCTGCGTTTTCTTGGTATAGTAATAGTAAATTGGTGCACCCTCTTTTTCGAACACCATCAATTACATCCGCCGAAGTAAACAACCCCAGTTGGGATTCTCACGAATCCCATAAATTGTCTCGAACTACTTCTGGAAATTGTTGTCAGTATGGTGGCTCAAATAAAAACCTGGAGAATATGATCGGTACGGTCATTGATCAGTATGGACAAGTTAAGCCAAAATTATCAAACAGTCAATGTGGAATGTTACCTGTTTCAGGGGTTGTTTCCGATCTTAAGTCCAAGGGACATGGTAATGTTTTCACTTCAGTGTTCTACGCAACATCTGGTACTCACCCTGTGTGGAGTCCGAAACCAGTCTGCCAGAACGAGAGTTCTCCCTTTCCCACAAGTACCTCCTCCCAGTCCAATCCTGAAAGTCACAACTCTGACCAATATCATGAATATTCCAATGATGCTACATGTCTTAATCAAAATGTAAAGGAAGACACTGATTTGGATCAGGCAAGGCGTGATTCTCCTGCTGCTGATCAGAGTGCTGGTAATAGTTTATGCCATGATGCTTCATATCATGTCAACAGTAGTGCGTATGGAAGCATGGACAGTGGAAATGATGGGCATGCTACTTCAGCTATAGTATCCAAGAACAACCCAGAAGTTTTCAGCGATAGTGTTTGTCATAATTATGATGGGTCTCGAGGCACAGAATCTCATCACACTAGTCAAAGAGAAGCAGCTCTAACCAAGTTTCGACTGAAGCGGAAAGAGCGATGCTTCGAGAAAAAGGTTCGATATCAAAGCCGGAAAAGGCTGGCAGAGCAGCGTCCTCGGGTCAAAGGGCAGTTTGTTCGCCAAGTACACAATGATCGTCCAGTTGCTGATGCCGGTGGTGATTCATGA 2004 0.4251 MAELSSTMQEHGTGNNGDRSAEGVQWERFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWELLKKNASELDLIITEVDLPAISGFALLSLIMEHEICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPIRRNELGNLWQHVWRRHASSTTAPITTFSPKNLETASEDNSASNKSSGSVASSKENNEYSERLSEAQDVPQLKRSKQQKIDLKYEKFTRFESESTKMDNETRDTAGCDKTFESADLRLEQDHGCADTEIEVEILKSDLGIGDSNISSELHGCSDEGVKPIKGAIDLIATFGNLPKHPDENCSLNGGNTTMFYGVTQLELSLRSDFPGSSCKQASEATEESQRLNHSNTSAFSWYSNSKLVHPLFRTPSITSAEVNNPSWDSHESHKLSRTTSGNCCQYGGSNKNLENMIGTVIDQYGQVKPKLSNSQCGMLPVSGVVSDLKSKGHGNVFTSVFYATSGTHPVWSPKPVCQNESSPFPTSTSSQSNPESHNSDQYHEYSNDATCLNQNVKEDTDLDQARRDSPAADQSAGNSLCHDASYHVNSSAYGSMDSGNDGHATSAIVSKNNPEVFSDSVCHNYDGSRGTESHHTSQREAALTKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDRPVADAGGDS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5603g00012 667 CDD psREC_PRR 37 140 - -
Vium5603g00012 667 MobiDBLite consensus disorder prediction 636 652 - -
Vium5603g00012 667 MobiDBLite consensus disorder prediction 636 667 - -
Vium5603g00012 667 MobiDBLite consensus disorder prediction 1 20 - -
Vium5603g00012 667 MobiDBLite consensus disorder prediction 198 217 - -
Vium5603g00012 667 MobiDBLite consensus disorder prediction 600 614 - -
Vium5603g00012 667 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Vium5603g00012 667 MobiDBLite consensus disorder prediction 485 515 - -
Vium5603g00012 667 MobiDBLite consensus disorder prediction 592 614 - -
Vium5603g00012 667 Pfam Response regulator receiver domain 37 146 IPR001789 GO:0000160
Vium5603g00012 667 SMART REC_2 35 150 IPR001789 GO:0000160
Vium5603g00012 667 Gene3D - 33 256 - -
Vium5603g00012 667 SUPERFAMILY CheY-like 35 160 IPR011006 -
Vium5603g00012 667 MobiDBLite consensus disorder prediction 165 217 - -
Vium5603g00012 667 Pfam CCT motif 611 653 IPR010402 GO:0005515
Vium5603g00012 667 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 361 IPR045279 GO:0009736
Vium5603g00012 667 MobiDBLite consensus disorder prediction 165 197 - -
Vium5603g00012 667 ProSiteProfiles CCT domain profile. 611 653 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5603g00012 Vium-Chr5603 77361 83166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5603g00012 574 655 Response Regulator Gene Family AT5G24470 54.878 1.15e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vium5603g00012 Response_reg 4.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5603g00012 K12130 - gmx:100791698 945.651