Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5603g00007 ATGGAAGCACAAAGCTCTCAGCAAACACAAGTTATTGAGATCAGTGGAGATTTTCCTGATGGCGGAAGAAAGATTTGTGGGGAAGCAACATGTGGGTTTGCAGATGCCGGATCCATCTCCAAGGATTCTGAAGAAAGATCAACTTCTATGCGAAAGCTCCTTATAGCAGTGATCCTTTGTGTTATTTTTATGACTGTTGAAGTGGTTGGTGGCATCAAAGCTAACAGTCTTGCTATACTGACTGATGCAGCACATTTGCTTTCTGATGTTGCAGCCTTTGCCATCTCCTTATTTTCTTTGTGGGCTGCTGGATGGGAAGCTACACCTCGCCAGTCATATGGATTTTTCCGAATAGAAATTCTTGGTGCCTTGGTTTCTATCCAATTAATATGGTTGCTTGCTGGTATTCTGGTATATGAAGCCATTGATAGAATCATTGCTGGTCCTAAAAGTGTGGATGGTTTCTTAATGTTTTTAGTTTCCGCATTTGGTCTTGTGGTTAATATCATCATGGCTTTGTTATTGGGTCATGATCATGGTCATCATGGTCATGGTCATGGTCATGGACACGGACATGATGGTCACAGACATGGACATGGACATGGACATGGACATGGACACAGTCATGGATTTACAGTTTCTACCCATCATGATGCAAGACATGCAAAAGATGAGCACCATCACACACATGATCACACAGACCATCACGATGATCATCATTCAAAAGATGAGCACCATCATGATCACCAAGAGCTTACTCAATCTCTTCTTGATGAATCAAAAACTAAGAAGAAGCAAAGGAACATAAATGTACAGGGAGCTTATCTCCATGTCCTTGGAGACTCTATCCAGAGTATTGGAGTAATGATTGGGGGAGCGGTAATATGGTATAAACCTGAGTGGCAAATAGTTGATTTAATTTGCACTCTGATATTTTCAGTAATAGTTTTGGTGACAACTATCAATATGCTGCGAAATATTTTGGAAGTTCTGATGGAGAGCACGCCTCGTGAGATAGATGCTACTAAGCTAGAAAGGGGGCTGTTGGATATGGAAGACGTGGTGGCTGTTCATGAACTGCACATATGGGCCATTACAGTAGGAAAGGTTTTACTGGCTTGTCATGTTAAAATCAGACGTGAAGCAGATGCAGACGTGGTGCTGGACAAGGTTATAGATTATATCAAACGGGTCTATAACATCAGTCATGTAACCATACAGATAGAGCGTTAG 1233 0.4161 MEAQSSQQTQVIEISGDFPDGGRKICGEATCGFADAGSISKDSEERSTSMRKLLIAVILCVIFMTVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIDRIIAGPKSVDGFLMFLVSAFGLVVNIIMALLLGHDHGHHGHGHGHGHGHDGHRHGHGHGHGHGHSHGFTVSTHHDARHAKDEHHHTHDHTDHHDDHHSKDEHHHDHQELTQSLLDESKTKKKQRNINVQGAYLHVLGDSIQSIGVMIGGAVIWYKPEWQIVDLICTLIFSVIVLVTTINMLRNILEVLMESTPREIDATKLERGLLDMEDVVAVHELHIWAITVGKVLLACHVKIRREADADVVLDKVIDYIKRVYNISHVTIQIER 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5603g00007 410 MobiDBLite consensus disorder prediction 211 254 - -
Vium5603g00007 410 NCBIfam cation diffusion facilitator family transporter 50 410 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vium5603g00007 410 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 338 409 IPR036837 -
Vium5603g00007 410 MobiDBLite consensus disorder prediction 181 206 - -
Vium5603g00007 410 MobiDBLite consensus disorder prediction 181 254 - -
Vium5603g00007 410 Pfam Cation efflux family 53 332 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vium5603g00007 410 SUPERFAMILY Cation efflux protein transmembrane domain-like 47 333 IPR027469 -
Vium5603g00007 410 Gene3D Cation efflux protein transmembrane domain 49 331 IPR027469 -
Vium5603g00007 410 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 22 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5603g00007 Vium-Chr5603 34783 36686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5603g00007 24 410 Inorganic Solute Cotransporters AT3G61940 58.763 1.15e-142 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5603g00007 K14689 - gmx:100794876 627.861