Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5603g00003 ATGCCTTTTCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAACCAAACTTTCAAACACTTCTGAGGCTGCAGCACATTACGAAACCATGGGAGGGAATGACCTATGTTCCAAGAATGGAAGCACAAGTTCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCGGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCATTTTCTTGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCACACAAAGTATCACAATCATGCCCCAAATCTCAGCCAGCAACCACAAGGGAAAGGCGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACACGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGGCGTCAAATGAATGACCATCTCAGTGTTCTAAGGTCCCTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGTGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGAGGTGGTTCTTCTTCCTCGGTGTTGTGTAAGCTCCCTCCAACACCGTCATCTTCATCACCACATGGCTATGGAATGAGGTCATCAACTAGTGAGGAAGTGAGCTGTGGAGATGAGATGAAAGCAGAAAACAAGTCAGAGGCAGCAGATATAAAAGTGACTTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAAACCAGGGCAATTGATAAAGGTCATTGTTGCTTTAGAGGACCTAAGGCTAACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGGCTGTAGCCTACTTTCAGCAAGTGACATTGCAGAAGCAGTTCATCATATATTCAACTTCATTAATGGTAGCTAG 1005 0.4507 MPFLQMLQSVESPQFFPLKEPNFQTLLRLQHITKPWEGMTYVPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPLSFSCVEKVSYECNQEPHKVSQSCPKSQPATTRERRKRKRTRPSKNTEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGSSSSVLCKLPPTPSSSSPHGYGMRSSTSEEVSCGDEMKAENKSEAADIKVTLIQTHVNLKIECQRKPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEGCSLLSASDIAEAVHHIFNFINGS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5603g00003 334 Gene3D - 123 200 IPR036638 GO:0046983
Vium5603g00003 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 183 IPR011598 GO:0046983
Vium5603g00003 334 MobiDBLite consensus disorder prediction 202 232 - -
Vium5603g00003 334 FunFam Basic helix-loop-helix transcription factor 123 198 - -
Vium5603g00003 334 Pfam Helix-loop-helix DNA-binding domain 133 184 IPR011598 GO:0046983
Vium5603g00003 334 CDD bHLH_AtFAMA_like 135 208 - -
Vium5603g00003 334 Coils Coil 180 200 - -
Vium5603g00003 334 MobiDBLite consensus disorder prediction 96 133 - -
Vium5603g00003 334 SMART finulus 138 189 IPR011598 GO:0046983
Vium5603g00003 334 MobiDBLite consensus disorder prediction 197 232 - -
Vium5603g00003 334 PANTHER TRANSCRIPTION FACTOR FAMA 72 328 IPR044283 GO:0003700|GO:0010052
Vium5603g00003 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 199 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5603g00003 Vium-Chr5603 21157 23737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5603g00003 6 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 40.162 1.81e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium5603g00003 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5603g00003 - - gmx:100789928 587.415