Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5603g00002 ATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTTTCATTGGAGACCCCCTGGGAGTGAATTGTTTGGACCAAGTTCTGGTTGACGAAGAGACCCTGAGACTAGAGGAGGAAGAACAGCTTCTGATATCAAGTTTAGAGGACAAGATGCCTTTTCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAACCAAACTTTCAAACACTTCTGAGGCTGCAGCACATTACGAAACCATGGGAGGGAATGACCTATGTTCCAAGAATGGAAGCACAAGTTCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCGGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCATTTTCTTGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCACACAAAGTATCACAATCATGCCCCAAATCTCAGCCAGCAACCACAAGGGAAAGGCGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACACGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGGCGTCAAATGAATGACCATCTCAGTGTTCTAAGGTCCCTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGTGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGAGGTGGTTCTTCTTCCTCGGTGTTGTGTAAGCTCCCTCCAACACCGTCATCTTCATCACCACATGGCTATGGAATGAGGTCATCAACTAGTGAGGAAGTGAGCTGTGGAGATGAGATGAAAGCAGAAAACAAGTCAGAGGCAGCAGATATAAAAGTGACTTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAAACCAGGGCAATTGATAAAGGTCATTGTTGCTTTAGAGGACCTAAGGCTAACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGGCTGTAGCCTACTTTCAGCAAGTGACATTGCAGAAGCAGTTCATCATATATTCAACTTCATTAATGGTAGCTAG 1149 0.4552 MERLQGPLNSCFIGDPLGVNCLDQVLVDEETLRLEEEEQLLISSLEDKMPFLQMLQSVESPQFFPLKEPNFQTLLRLQHITKPWEGMTYVPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPLSFSCVEKVSYECNQEPHKVSQSCPKSQPATTRERRKRKRTRPSKNTEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGSSSSVLCKLPPTPSSSSPHGYGMRSSTSEEVSCGDEMKAENKSEAADIKVTLIQTHVNLKIECQRKPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEGCSLLSASDIAEAVHHIFNFINGS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5603g00002 382 Gene3D - 171 252 IPR036638 GO:0046983
Vium5603g00002 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 247 IPR036638 GO:0046983
Vium5603g00002 382 FunFam Basic helix-loop-helix transcription factor 171 246 - -
Vium5603g00002 382 MobiDBLite consensus disorder prediction 250 280 - -
Vium5603g00002 382 CDD bHLH_AtFAMA_like 183 256 - -
Vium5603g00002 382 Pfam Helix-loop-helix DNA-binding domain 181 232 IPR011598 GO:0046983
Vium5603g00002 382 Coils Coil 228 248 - -
Vium5603g00002 382 MobiDBLite consensus disorder prediction 144 181 - -
Vium5603g00002 382 SMART finulus 186 237 IPR011598 GO:0046983
Vium5603g00002 382 PANTHER TRANSCRIPTION FACTOR FAMA 118 376 IPR044283 GO:0003700|GO:0010052
Vium5603g00002 382 MobiDBLite consensus disorder prediction 245 280 - -
Vium5603g00002 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5603g00002 Vium-Chr5603 21157 24068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5603g00002 39 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.642 1.72e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium5603g00002 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5603g00002 - - gmx:100789928 649.432