Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5600g00059 ATGTCTCTAACAGGTCGTTCTCGTATAGTTGTGAATGGGGTCAGAAGAACAAGAACTTTTCACTATTTCTGGTGCCTGTACTGCCAAAGAACCGTGAGGATACCCTTTACAAACAACGATGGTTCTACATGTCCCTATTGCTTCCACCACCTGCGTTACGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACATGCCAAATAACTTGCAACCTTCACCAGCTACTCAACTTTTGCATAACTTGGCCCTCATTCTTGATCCACCTCTAAGGAGGCAAAACAACAACCATTTCAACACAACCACATGGGAAACAGAAAATGAACATGGTGCAGATTCTCAGGCTTGGATCACACTCCGATTTCCAAGACCAACTCCTGCACCTAGGCCTATTTCCCCACCACAAAACATGGTTCCTCCGACCAATGACACCGACACGTTATTAGATGACTTCATCGATGGAATGATTCAGAACAATAACAGACCAGGGCCACCTCCTGCAGCATCTTCTGCCATTGCAGCATTGCCAATGGTGAAACTGACACAAACCCATTTGGGTAGTGATCCCAATTGCCCAATCTGCAAAGATGAGTTTGAGCTCGACATGGAAGCCAGAGAGTTGCCATGCAATCATTTCTACCATTCTGACTGCATCATCCCTTGGCTGCGCATGCACAACACTTGCCCCGTATGCCGATACGAGCTACAAGGTGTGGTTACTCCTAATGCTAATTACAGTTTCCAAAGCGATGAGAATGACCTGAGGTTTGCTTTTGAAGATTTCTCAAACAGCTTGAACTGGATTTGGAACCACTTGGCTTCATTCAGGCCTATTCGTTCAGTCCTAGATTGGACACGGTCCTACTTTGATTTCCAAGAAACTCGTCTTCGTGTTCGTCGAGGTAGTTCTTCTTGGTGGCGATCATTGTTCGTTGTATAG 939 0.4569 MSLTGRSRIVVNGVRRTRTFHYFWCLYCQRTVRIPFTNNDGSTCPYCFHHLRYELDISRPRLLMNMPNNLQPSPATQLLHNLALILDPPLRRQNNNHFNTTTWETENEHGADSQAWITLRFPRPTPAPRPISPPQNMVPPTNDTDTLLDDFIDGMIQNNNRPGPPPAASSAIAALPMVKLTQTHLGSDPNCPICKDEFELDMEARELPCNHFYHSDCIIPWLRMHNTCPVCRYELQGVVTPNANYSFQSDENDLRFAFEDFSNSLNWIWNHLASFRPIRSVLDWTRSYFDFQETRLRVRRGSSSWWRSLFVV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5600g00059 312 SMART ring_2 191 231 IPR001841 -
Vium5600g00059 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 238 IPR013083 -
Vium5600g00059 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 109 235 - -
Vium5600g00059 312 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Vium5600g00059 312 SUPERFAMILY RING/U-box 172 236 - -
Vium5600g00059 312 Pfam Ring finger domain 190 232 IPR001841 -
Vium5600g00059 312 FunFam E3 ubiquitin-protein ligase RING1-like 154 238 - -
Vium5600g00059 312 CDD RING-H2_RNF126-like 190 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5600g00059 Vium-Chr5600 293504 294908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5600g00059 1 294 C3H Transcription Factor Family AT1G68180 32.323 4.60e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5600g00059 K11982 - gmx:100793656 431.409