Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium5600g00034 | ATGGGAAGAAAAGGTGGAGGAAGGTTTTTTGAAAAATCTCTCCGTCGCCGTATTGAGATCTGCACGTCCAAATACTCCACTGCCGAAGAAATCGCCAACCATCTCCGTTCAACTTATCCCGATTACCACAGAACCAAACAACAAACCCTAATTCGGTTTGTTCAGGAAGCTATTCATTCCATGGAGAAGCTGAATCACACTCCCACGCCTAAGTATTCAGACGACGGCAACATAGAGTCCCAACGCGCGTCTCGAAAGCGTAAGAAGAATATTGACGAAGGTGAAGAAAGGCTGAAGAAAATGGAAGCTTTACACGTGCGAAGGAGGGTGCAGAGTTCTTCGGAGAGTAATGACGAGGAGAGTAATGATGAGGAATCGGTGTCGGAGGACGCAATTTACGGTGAGAAGTTGGAGCCTCAGTTTGATTTGATGAAGGAAATGCTAAGGATGTCATATACGCCAAAGAAGGTGGCGGCAGCAGCAACGGAAGAAAAGAACATTGAAATAGAGATGGGTAATATAAGTAAAGGCACGGAGATGGGTAATATAAGTAAAGCCACGGTTCTGAATGAGGTGGGAGACCCATCTCTGCTTTCGGTTTCGGTTTCAAACGGTGAGGGGAAGAAAGATTGGCCTAGATTTAAGGATTTTGGTGGGATGAAAGAAGTTTTGGAGGAACTAAGAGAAGAGTTGATTGTACCTTTGGTTCATGGTGAAATTCTTAGAAAATTAGGAGGGAAGCCAAAGGCAGTTGGCATTTTATTGCAGGGTCCACCTGGATGTGGGAAGACCACACTTGCTCATGCTATAGCTAATGAGTCAGGTCTTCCTTACTATCGGATTTCAGCTACTGAACTAGTCTCTGGGGTATCAGGTGCATCTGAAGAAAATATTAGGGAATTTTTTGCTAAAGCTTACAGAACTGCACCTTCTATAGTCTTTATTGATGAGATTGATGCAATTGGTTCTAAAAGAGAGAATTTGCAGCGGGAAATGGAAAAACGAATGGTGATGCAATTAAGCACTTGCATGGATCAATCAACTGCTGATAATGTTATTGTAATAGGAGCTACAAATAGGCCTGATTCTCTTGACCCTGCCTTAAGAAGACGATTTGATCGTGAAATTAGCATTTGTGAACCTGATGAATCCGCCAGGAAGGAGATTCTATCTATTCTTACTTCTAATTTTAGATTTGATGGTTTATTTGATCTACATGAAATAGCCAAGTTTACATCAGGATTTGTTGGTGCTGATTTGGTAACTCTAGTTGATAAGGCTCTTCGATGGGCAACAAAGAGAATAATTAACGAAAGAACGAAGAGAATAATTGACCAAAGGAGACATGAAATACCTGAACTCATGAGCGAGCATATTGAAGAATGGCGGAGGGAACCTTTGTCCACGGAAGAATTAGATGAGTTTGCCTTCATCAAAATCTCCGATTTTGAGCAAGCATTAAGAAAGGTACAACCTTCATTAAGAAGAGAAGGATTTGCTAGCATTCCTAAGGTAAAATGGGAAGACGTTGGGGGGCTTGATCATTTAAGAAAGGAGTTTGAACGATATATTGTAAGGCGTATAAAATATCCTGAAGATTATGAGGCACTTGGGATTAATCTCGAGACTGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACATTGATTGCCAAAGCTGTTGCCGGTGAGGCAGGGGCTAGTTTTATCCATATTGAGGGTGCCCAACTTTTAAATAAATATGTTGGGGAAAGTGAGCTTGCCGTTCGAACATTGTTTAGCCGTGCAAGGTCATGTGCACCATGTATAATTTTCTTTGACGAGATTGATTCATTGACAAAAGAACGTGGTAAAGAGGGTGGTTGGGTTACCGAGCGACTGTTGAACCAGTTGCTTATCGAGTTGGATGGTGGAGAGCATCGACACGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGATGATGGATCGTGCTCTCTTACGGCCGGGTAGATTTGGTAAACTTCTTTATGTTCCTCTACCTGGCCTTGATGAGCGAGTTTTGATATTGAAAGCTCTTGCAAGGACTATGACAATTGATGCCACTGTGGATTTGAGTGCAATTGCCAGAATGGAAGTTTGTGAAAACCTAAGTGGCGCTGATCTTCGTAAATTGATGAGTGAAGCGGCAATGGCTGCTTGGGATGAGAAAGATAAAACTGTCAAGAGTATTCATTTTGAGATGGCACTAAGTAAAATCTCGCCGTCAGTGTCTAACAGGGAAAAGCAGTATTATCAGCACTTGTCGGAGAGGTTTAAAGTGGCGTGA | 2313 | 0.4224 | MGRKGGGRFFEKSLRRRIEICTSKYSTAEEIANHLRSTYPDYHRTKQQTLIRFVQEAIHSMEKLNHTPTPKYSDDGNIESQRASRKRKKNIDEGEERLKKMEALHVRRRVQSSSESNDEESNDEESVSEDAIYGEKLEPQFDLMKEMLRMSYTPKKVAAAATEEKNIEIEMGNISKGTEMGNISKATVLNEVGDPSLLSVSVSNGEGKKDWPRFKDFGGMKEVLEELREELIVPLVHGEILRKLGGKPKAVGILLQGPPGCGKTTLAHAIANESGLPYYRISATELVSGVSGASEENIREFFAKAYRTAPSIVFIDEIDAIGSKRENLQREMEKRMVMQLSTCMDQSTADNVIVIGATNRPDSLDPALRRRFDREISICEPDESARKEILSILTSNFRFDGLFDLHEIAKFTSGFVGADLVTLVDKALRWATKRIINERTKRIIDQRRHEIPELMSEHIEEWRREPLSTEELDEFAFIKISDFEQALRKVQPSLRREGFASIPKVKWEDVGGLDHLRKEFERYIVRRIKYPEDYEALGINLETGFLLYGPPGCGKTLIAKAVAGEAGASFIHIEGAQLLNKYVGESELAVRTLFSRARSCAPCIIFFDEIDSLTKERGKEGGWVTERLLNQLLIELDGGEHRHGVFVIGATNRPEMMDRALLRPGRFGKLLYVPLPGLDERVLILKALARTMTIDATVDLSAIARMEVCENLSGADLRKLMSEAAMAAWDEKDKTVKSIHFEMALSKISPSVSNREKQYYQHLSERFKVA | 770 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium5600g00034 | 770 | Pfam | AAA+ lid domain | 698 | 742 | IPR041569 | - | |
Vium5600g00034 | 770 | ProSitePatterns | AAA-protein family signature. | 645 | 663 | IPR003960 | GO:0005524|GO:0016887 | |
Vium5600g00034 | 770 | Pfam | ATPase family associated with various cellular activities (AAA) | 253 | 378 | IPR003959 | GO:0005524|GO:0016887 | |
Vium5600g00034 | 770 | Pfam | ATPase family associated with various cellular activities (AAA) | 546 | 674 | IPR003959 | GO:0005524|GO:0016887 | |
Vium5600g00034 | 770 | ProSitePatterns | AAA-protein family signature. | 352 | 371 | IPR003960 | GO:0005524|GO:0016887 | |
Vium5600g00034 | 770 | Gene3D | - | 381 | 497 | - | - | |
Vium5600g00034 | 770 | Gene3D | - | 503 | 760 | IPR027417 | - | |
Vium5600g00034 | 770 | FunFam | ATPase, AAA family protein | 503 | 695 | - | - | |
Vium5600g00034 | 770 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 503 | 767 | IPR027417 | - | |
Vium5600g00034 | 770 | Gene3D | - | 205 | 379 | IPR027417 | - | |
Vium5600g00034 | 770 | PANTHER | AAA-FAMILY ATPASE | 89 | 768 | - | - | |
Vium5600g00034 | 770 | MobiDBLite | consensus disorder prediction | 78 | 116 | - | - | |
Vium5600g00034 | 770 | MobiDBLite | consensus disorder prediction | 63 | 135 | - | - | |
Vium5600g00034 | 770 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 214 | 496 | IPR027417 | - | |
Vium5600g00034 | 770 | Gene3D | - | 676 | 746 | - | - | |
Vium5600g00034 | 770 | Pfam | Nucleolin binding domain | 4 | 62 | IPR031996 | - | |
Vium5600g00034 | 770 | SMART | AAA_5 | 249 | 382 | IPR003593 | GO:0016887 | |
Vium5600g00034 | 770 | SMART | AAA_5 | 541 | 677 | IPR003593 | GO:0016887 | |
Vium5600g00034 | 770 | FunFam | Ribosome biogenesis ATPase RIX7 | 203 | 379 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium5600g00034 | Vium-Chr5600 | 183407 | 187804 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium5600g00034 | 478 | 768 | Calmodulin-binding Proteins | AT3G56690 | 43.729 | 6.37e-67 | 238 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium5600g00034 | K14571 | - | gmx:100809594 | 1028.85 |