Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5600g00034 ATGGGAAGAAAAGGTGGAGGAAGGTTTTTTGAAAAATCTCTCCGTCGCCGTATTGAGATCTGCACGTCCAAATACTCCACTGCCGAAGAAATCGCCAACCATCTCCGTTCAACTTATCCCGATTACCACAGAACCAAACAACAAACCCTAATTCGGTTTGTTCAGGAAGCTATTCATTCCATGGAGAAGCTGAATCACACTCCCACGCCTAAGTATTCAGACGACGGCAACATAGAGTCCCAACGCGCGTCTCGAAAGCGTAAGAAGAATATTGACGAAGGTGAAGAAAGGCTGAAGAAAATGGAAGCTTTACACGTGCGAAGGAGGGTGCAGAGTTCTTCGGAGAGTAATGACGAGGAGAGTAATGATGAGGAATCGGTGTCGGAGGACGCAATTTACGGTGAGAAGTTGGAGCCTCAGTTTGATTTGATGAAGGAAATGCTAAGGATGTCATATACGCCAAAGAAGGTGGCGGCAGCAGCAACGGAAGAAAAGAACATTGAAATAGAGATGGGTAATATAAGTAAAGGCACGGAGATGGGTAATATAAGTAAAGCCACGGTTCTGAATGAGGTGGGAGACCCATCTCTGCTTTCGGTTTCGGTTTCAAACGGTGAGGGGAAGAAAGATTGGCCTAGATTTAAGGATTTTGGTGGGATGAAAGAAGTTTTGGAGGAACTAAGAGAAGAGTTGATTGTACCTTTGGTTCATGGTGAAATTCTTAGAAAATTAGGAGGGAAGCCAAAGGCAGTTGGCATTTTATTGCAGGGTCCACCTGGATGTGGGAAGACCACACTTGCTCATGCTATAGCTAATGAGTCAGGTCTTCCTTACTATCGGATTTCAGCTACTGAACTAGTCTCTGGGGTATCAGGTGCATCTGAAGAAAATATTAGGGAATTTTTTGCTAAAGCTTACAGAACTGCACCTTCTATAGTCTTTATTGATGAGATTGATGCAATTGGTTCTAAAAGAGAGAATTTGCAGCGGGAAATGGAAAAACGAATGGTGATGCAATTAAGCACTTGCATGGATCAATCAACTGCTGATAATGTTATTGTAATAGGAGCTACAAATAGGCCTGATTCTCTTGACCCTGCCTTAAGAAGACGATTTGATCGTGAAATTAGCATTTGTGAACCTGATGAATCCGCCAGGAAGGAGATTCTATCTATTCTTACTTCTAATTTTAGATTTGATGGTTTATTTGATCTACATGAAATAGCCAAGTTTACATCAGGATTTGTTGGTGCTGATTTGGTAACTCTAGTTGATAAGGCTCTTCGATGGGCAACAAAGAGAATAATTAACGAAAGAACGAAGAGAATAATTGACCAAAGGAGACATGAAATACCTGAACTCATGAGCGAGCATATTGAAGAATGGCGGAGGGAACCTTTGTCCACGGAAGAATTAGATGAGTTTGCCTTCATCAAAATCTCCGATTTTGAGCAAGCATTAAGAAAGGTACAACCTTCATTAAGAAGAGAAGGATTTGCTAGCATTCCTAAGGTAAAATGGGAAGACGTTGGGGGGCTTGATCATTTAAGAAAGGAGTTTGAACGATATATTGTAAGGCGTATAAAATATCCTGAAGATTATGAGGCACTTGGGATTAATCTCGAGACTGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACATTGATTGCCAAAGCTGTTGCCGGTGAGGCAGGGGCTAGTTTTATCCATATTGAGGGTGCCCAACTTTTAAATAAATATGTTGGGGAAAGTGAGCTTGCCGTTCGAACATTGTTTAGCCGTGCAAGGTCATGTGCACCATGTATAATTTTCTTTGACGAGATTGATTCATTGACAAAAGAACGTGGTAAAGAGGGTGGTTGGGTTACCGAGCGACTGTTGAACCAGTTGCTTATCGAGTTGGATGGTGGAGAGCATCGACACGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGATGATGGATCGTGCTCTCTTACGGCCGGGTAGATTTGGTAAACTTCTTTATGTTCCTCTACCTGGCCTTGATGAGCGAGTTTTGATATTGAAAGCTCTTGCAAGGACTATGACAATTGATGCCACTGTGGATTTGAGTGCAATTGCCAGAATGGAAGTTTGTGAAAACCTAAGTGGCGCTGATCTTCGTAAATTGATGAGTGAAGCGGCAATGGCTGCTTGGGATGAGAAAGATAAAACTGTCAAGAGTATTCATTTTGAGATGGCACTAAGTAAAATCTCGCCGTCAGTGTCTAACAGGGAAAAGCAGTATTATCAGCACTTGTCGGAGAGGTTTAAAGTGGCGTGA 2313 0.4224 MGRKGGGRFFEKSLRRRIEICTSKYSTAEEIANHLRSTYPDYHRTKQQTLIRFVQEAIHSMEKLNHTPTPKYSDDGNIESQRASRKRKKNIDEGEERLKKMEALHVRRRVQSSSESNDEESNDEESVSEDAIYGEKLEPQFDLMKEMLRMSYTPKKVAAAATEEKNIEIEMGNISKGTEMGNISKATVLNEVGDPSLLSVSVSNGEGKKDWPRFKDFGGMKEVLEELREELIVPLVHGEILRKLGGKPKAVGILLQGPPGCGKTTLAHAIANESGLPYYRISATELVSGVSGASEENIREFFAKAYRTAPSIVFIDEIDAIGSKRENLQREMEKRMVMQLSTCMDQSTADNVIVIGATNRPDSLDPALRRRFDREISICEPDESARKEILSILTSNFRFDGLFDLHEIAKFTSGFVGADLVTLVDKALRWATKRIINERTKRIIDQRRHEIPELMSEHIEEWRREPLSTEELDEFAFIKISDFEQALRKVQPSLRREGFASIPKVKWEDVGGLDHLRKEFERYIVRRIKYPEDYEALGINLETGFLLYGPPGCGKTLIAKAVAGEAGASFIHIEGAQLLNKYVGESELAVRTLFSRARSCAPCIIFFDEIDSLTKERGKEGGWVTERLLNQLLIELDGGEHRHGVFVIGATNRPEMMDRALLRPGRFGKLLYVPLPGLDERVLILKALARTMTIDATVDLSAIARMEVCENLSGADLRKLMSEAAMAAWDEKDKTVKSIHFEMALSKISPSVSNREKQYYQHLSERFKVA 770
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium5600g00034 770 Pfam AAA+ lid domain 698 742 IPR041569 -
Vium5600g00034 770 ProSitePatterns AAA-protein family signature. 645 663 IPR003960 GO:0005524|GO:0016887
Vium5600g00034 770 Pfam ATPase family associated with various cellular activities (AAA) 253 378 IPR003959 GO:0005524|GO:0016887
Vium5600g00034 770 Pfam ATPase family associated with various cellular activities (AAA) 546 674 IPR003959 GO:0005524|GO:0016887
Vium5600g00034 770 ProSitePatterns AAA-protein family signature. 352 371 IPR003960 GO:0005524|GO:0016887
Vium5600g00034 770 Gene3D - 381 497 - -
Vium5600g00034 770 Gene3D - 503 760 IPR027417 -
Vium5600g00034 770 FunFam ATPase, AAA family protein 503 695 - -
Vium5600g00034 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 767 IPR027417 -
Vium5600g00034 770 Gene3D - 205 379 IPR027417 -
Vium5600g00034 770 PANTHER AAA-FAMILY ATPASE 89 768 - -
Vium5600g00034 770 MobiDBLite consensus disorder prediction 78 116 - -
Vium5600g00034 770 MobiDBLite consensus disorder prediction 63 135 - -
Vium5600g00034 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 496 IPR027417 -
Vium5600g00034 770 Gene3D - 676 746 - -
Vium5600g00034 770 Pfam Nucleolin binding domain 4 62 IPR031996 -
Vium5600g00034 770 SMART AAA_5 249 382 IPR003593 GO:0016887
Vium5600g00034 770 SMART AAA_5 541 677 IPR003593 GO:0016887
Vium5600g00034 770 FunFam Ribosome biogenesis ATPase RIX7 203 379 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium5600g00034 Vium-Chr5600 183407 187804 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5600g00034 478 768 Calmodulin-binding Proteins AT3G56690 43.729 6.37e-67 238
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5600g00034 K14571 - gmx:100809594 1028.85