Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5600g00026 ATGAAGATGTTGTTGCTACCCTTGATGTTTGCAGTGTTTTCTTCCATGAGTTTGAGTTTGGCAGCGCCTTCTCCATCCCCGACATCGACATGCCCCATGGACTTGAATTATGTTCTGAGAATCCCATGGAACAATTCTGTTTGCCACAACTTCCAACGGAATTTGGCAACAAGAAATGGAACAGATGCAAACACTTGTTGCATATCACTGTTGTCCCTCTTTGGCGTAGGACTTGCGCAGCATCTCAAAGAGACTTCTCAGTTCCAACTCCCCAACCTTGCCACCTCAGTTTCATGCATCCAAGACTTCCAATCGAAGATCTCTTCCCTCTCTCTCCCCGACAACCTTGTAGACTCCTGCTTTGACCCTCTTCAGTTTGTGATCTCTCCCAACATCTGTGCTGGGATTCAGACAATCTCTGATTGGACCAAAAAGCTTGGTCAGTCCACAGCACTCAACACTGCTTGCAAACCGGATCTCACCGATCTCCCCCTCTGTGATTTGTGTGTGGGAGCTGGGTTACAGGTCAAGCAGGAGCTTATTTCCATAGATGGTAACACTTCTCACTCCATGGATTGTTTTTACTTTACAATACTCTATGCTGCTGGGATTGTGAACGAGTTTGGACCGGAAAGCAATGGTGCCGTGACTTGTATTTTTAGCATGCCTGTTTATTCAAGGGGGGGTTCTGGGGGAAAGAGTCACCAGGCTCTTGTTTTTGGGTTGACGGGAGCTGGGGTGGCTTTGCTGGTGATGTCTTCTCTGTTGGGGCTTTATGTGTGGTGCGACAGGAAGCACAGGAGGAAAAAGCTTGAGACTTTTCAGTTTGATTTTGACCCTGAGGAACAAGGGTCTAGGCGTAGATTGAGGCCTAATACGGGGTCCATTTGGTTCAAAATTGGGGAGCTTGAGAAAGCCACTGATAATTTTTCATCGAAGAACTTCATTGGCCGTGGTGGGTTTGGGTTGGTTTACGAGGGAACCTTGTCTAATGGGACTGTGGTGGCGGTTAAAAGGATCTTGGAATCTGATTTTCAAGGAGATGTGGAGTTCTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCATCGCAATCTGGTGCCTCTGAGAGGCTGTTGTGTGGCTGAGGAGAGTGAGAATTATGATGAAAGGGGAAGCCAAAGGTATCTTGTGTATGATTACATGCCAAATGGAAACCTGGAGGACCATCTGTTTGTGTCATCAGACTCTCCGAAAGCAAAGGGATCATTGACATGGCCTGAGAGGAAAAGCATAATCTTGGATGTGGCAAAGGGGTTGGCCTATTTGCAGTATGGAGTTCAACCTATAATTTTGCATAGGGATATCAAAGCCACCAATATTCTACTTGATGCGGATATGAGGGCAAGAGTCGCTGATTTTGGTCTTGCCAAACAAAGCCGAGAGGGTCAGTCTCATCTGACAACCAGAGTGGCTGGAACTCATGGATATCTAGCTCCAGAATATGCACTCTATGGTCAGCTCACTGAGAAGAGTGATGTGTATAGTTTTGGTGTAGTTGTTCTGGAGATTATGTGTGGGAGAAAGGCTCTTGACTTGTCATCATCAGGATCACCAAGGGCATTCTTGATCACAGATTGGGCCTGGTCACTGGTAAAGGCTGGGAAGTTAGAAGAGGCTCTAGATAGTTCCCTGGTGAAGGATGAGAACTTTCCTAGCTCAAATCCTAAGAGCATAATGGAGAGGTTTTTGCTGGTGGGGATTCTATGCTCCCATGTCATGGTTGCTTTGAGACCAACAATTTCTGATGCTTTGAAGATGTTGGAAGGTGACATTGAGGTTCCACAAATCCCAGATCGCCCTATGCCTCTTGGCCACCCTGCCTTTTACAATGATGCCAGTACTTTTAGCATATCTCCAGCATTAAGTGGCCTCAAGTTGCAAACTGGTGACATGCTCAGGTCCATTAACGAGGGCTAA 1959 0.4645 MKMLLLPLMFAVFSSMSLSLAAPSPSPTSTCPMDLNYVLRIPWNNSVCHNFQRNLATRNGTDANTCCISLLSLFGVGLAQHLKETSQFQLPNLATSVSCIQDFQSKISSLSLPDNLVDSCFDPLQFVISPNICAGIQTISDWTKKLGQSTALNTACKPDLTDLPLCDLCVGAGLQVKQELISIDGNTSHSMDCFYFTILYAAGIVNEFGPESNGAVTCIFSMPVYSRGGSGGKSHQALVFGLTGAGVALLVMSSLLGLYVWCDRKHRRKKLETFQFDFDPEEQGSRRRLRPNTGSIWFKIGELEKATDNFSSKNFIGRGGFGLVYEGTLSNGTVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVAEESENYDERGSQRYLVYDYMPNGNLEDHLFVSSDSPKAKGSLTWPERKSIILDVAKGLAYLQYGVQPIILHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKAGKLEEALDSSLVKDENFPSSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPAFYNDASTFSISPALSGLKLQTGDMLRSINEG 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5600g00026 652 SUPERFAMILY Protein kinase-like (PK-like) 291 602 IPR011009 -
Vium5600g00026 652 Gene3D Phosphorylase Kinase; domain 1 280 394 - -
Vium5600g00026 652 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Vium5600g00026 652 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 395 609 - -
Vium5600g00026 652 Pfam SPARK 27 194 IPR043891 -
Vium5600g00026 652 FunFam probable receptor-like protein kinase At1g11050 271 394 - -
Vium5600g00026 652 Pfam Protein kinase domain 312 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00026 652 Gene3D Transferase(Phosphotransferase) domain 1 395 609 - -
Vium5600g00026 652 CDD STKc_IRAK 316 603 - -
Vium5600g00026 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Vium5600g00026 652 ProSiteProfiles Protein kinase domain profile. 310 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00026 652 SMART serkin_6 310 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00026 652 PANTHER OS01G0750732 PROTEIN 56 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5600g00026 Vium-Chr5600 135759 138767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5600g00026 26 647 Receptor kinase-like Gene Family AT1G11050 64.205 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vium5600g00026 Pkinase 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5600g00026 - - gmx:100806560 1143.26