Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5600g00022 ATGGAGGGGAATTTCAGTTCCCATAATCCTCAACTAGCTTCTAGCTTGAAGGAGAGTTACAGTAAGCAGGAGCAGGAGCATGATCATTCAGGGGAGGATCATCGTCTCAAAGAAGAAGATTATATGTCTCCATCTTTCAATCTGAGGAATATTTCTAAGCTCATTCTTCCCCCACTTGGTGTTTCAAGCCAGAATCCTGTTAACTCAAAAGGGTGGATCATATCACCAATGGATTCCAGATACAGGTGTTGGGAGAGTTTTATGGTTCTTCTGGTAGCTTATTCTGCATGGGTTTATCCCTTCGAAGTTGCTTTCATGCACAAATCTTCTAACATGAAAATCTATGTAGCGGACACTGTTGTTGATATTTTCTTCGGTATTGACATTGTTTTGACATTCTTCTTGGCTTACATTGATCGAACAACTCATCTACTGGTTCGAGACAAGAAGAAGATTATAGTAAGATACTTGTCTACATGGTTCGTGATGGATTTGGCATCAACCATACCATATGAGGCACTCGGGTATTTGTTCACTGGAAAACGCAAAGTGGGTCTTCCATACTTCCTCTTGGGCCTGCTTAGATTTTGGAGAATAAGACGAGTCAAGCAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCTGTAACCCTTTTTTCAATTCATTGTGCTGGATGTCTGTATTACATGCTAGCTGATCGTTATCCCCACAAAGGGAAGACATGGATTGGAGCTGTGAATCCAAACTTCAGAGAGACAAGCCTTCGGATCAGATACATTTCTGCCATGTACTGGTCCATCACTACCATGACCACTGTAGGTTATGGAGACCTTCATGCCGTCAACACCATGGAGATGATCTTCATTATTTTCTACATGCTCTTTAACCTTGGCCTAACTTCTTACTTGATCGGTAACATGACAAATCTTGTTGTCGAAGGAACTCGTCGAACCATGGAATTTAGAAATGGCATTGAGGCAGCATCAAACTTTGTGTGCCGAAATCGGTTGCCTCCGAGGTTAAAAGAACAGATCTTGGCGTACATGTGTTTGAGATTTAAGGCAGAGAGTTTGAATCAGCATCAGCTTATTGAGCAGCTACCAAAGTCTATTTGCAAAAGCATCTGCCAGCACTTGTTTTTTGAAACTGTGGAGAAAGTCTATCTTTTCAAAGGCGTATCAAAAGAAATAATTTTGTCCCTGGTTGCAAAAGTGAAGGCAGAGTACATACCACCGAGAGAGGATGTTATCATGCAAAATGAAGCACCAGATGATATTTACATTATTGTGTCTGGAGAAGTGGAGATCATAGATAGTGTGATGGAGAAAGAGAAAACTTTAGGGACTCTGCATACTGGGGACATGTTTGGAGAGGTTGGTGCCCTTTGTTGTAGGCCTCAGAGCTTTACCTACAGAACCAAGACTCTTACACAGCTCCTGAGACTGAAAACCAACACCCTTCTAGAATCAATGCAGATTAAAAGAGAAGACAACATACAAATACTCAAAAATTTTCTTCAGCATTTCAAGCAGATTAAGAATCTGAGTATCAGAGATTTGATGGTGGAGAATGTGGAAGAAGAGGATCCTAACATGGCTGTGAACTTGTTAACTGTGGCCAGCACAGGCAATGCTGCTTTTCTTGAGGAGCTTCTGAGAGCAGGTTTGGATCCTGACATTGGAGACTCTGAAGGGAAAACTCCATTGCATATAGCAGCATCAAATGGGCATGAAGAATGTGTTAAAGTGTTACTAAAGCATACATGCAACATACATATAAAAGACATGAATGATAACACTGCAATGTGGGGTGCTATAGCATCAAAACATTACTCCATATTTCGACTTCTATTCCAGTTTGCTGCTCTCTCAGACCAGAACACAGCAGGTGATCTTCTGTGTACAGCCGCCAAAAGAAACGAATTAACAGTGATGGCAGATCTTTTGAAACAAGGATTAAACGTTGACTCTAAAGATCGTCATGATGCAACAGCAATCCAAATTGCTATGAAAGAAAATCATGTGCAAATGGTTAAGTTGCTTGTCCTGAATGGTGCAGATGTATCTGATGTACATAGTCATGAATTTTGTTCATCCACCATGACTGAAATGCTGCACAATTGTGAAGTTGGACATAGAATTAATGTAATTGAGTTTATGTCGGATGAAGTTGCATCAAAAGGGAAACATCAAGAGGAGGAACATATTGGAGAAACAAGATATGATGGACCAAAGATTGCTAGAGTAAGCATATATAGAGGTCATCCTGTAGTGAGAAGAGAAAAAGGTATCATGCAAGCTGGGAAGCTAATAAGGATGCCTGATTCATTAGATGAACTCAAAAAAATTGCAGGTGAAAAATTTGGGATTGATGCGAAAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGACTCCATTGATGTGATTAGAGATAATGATAAACTTTTTTTTGTTGACTGA 2502 0.4029 MEGNFSSHNPQLASSLKESYSKQEQEHDHSGEDHRLKEEDYMSPSFNLRNISKLILPPLGVSSQNPVNSKGWIISPMDSRYRCWESFMVLLVAYSAWVYPFEVAFMHKSSNMKIYVADTVVDIFFGIDIVLTFFLAYIDRTTHLLVRDKKKIIVRYLSTWFVMDLASTIPYEALGYLFTGKRKVGLPYFLLGLLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHKGKTWIGAVNPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTSYLIGNMTNLVVEGTRRTMEFRNGIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFFETVEKVYLFKGVSKEIILSLVAKVKAEYIPPREDVIMQNEAPDDIYIIVSGEVEIIDSVMEKEKTLGTLHTGDMFGEVGALCCRPQSFTYRTKTLTQLLRLKTNTLLESMQIKREDNIQILKNFLQHFKQIKNLSIRDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSEGKTPLHIAASNGHEECVKVLLKHTCNIHIKDMNDNTAMWGAIASKHYSIFRLLFQFAALSDQNTAGDLLCTAAKRNELTVMADLLKQGLNVDSKDRHDATAIQIAMKENHVQMVKLLVLNGADVSDVHSHEFCSSTMTEMLHNCEVGHRINVIEFMSDEVASKGKHQEEEHIGETRYDGPKIARVSIYRGHPVVRREKGIMQAGKLIRMPDSLDELKKIAGEKFGIDAKDAMVTNEEGAEIDSIDVIRDNDKLFFVD 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5600g00022 833 FunFam Potassium channel KAT2 389 525 - -
Vium5600g00022 833 SMART ANK_2a 543 572 IPR002110 GO:0005515
Vium5600g00022 833 SMART ANK_2a 609 640 IPR002110 GO:0005515
Vium5600g00022 833 SMART ANK_2a 576 605 IPR002110 GO:0005515
Vium5600g00022 833 SMART ANK_2a 673 702 IPR002110 GO:0005515
Vium5600g00022 833 PANTHER POTASSIUM CHANNEL AKT1 48 832 IPR045319 GO:0005249|GO:0006813
Vium5600g00022 833 MobiDBLite consensus disorder prediction 1 19 - -
Vium5600g00022 833 Pfam Ankyrin repeats (3 copies) 552 631 IPR002110 GO:0005515
Vium5600g00022 833 CDD CAP_ED 401 514 IPR000595 -
Vium5600g00022 833 PRINTS Ankyrin repeat signature 577 592 IPR002110 GO:0005515
Vium5600g00022 833 PRINTS Ankyrin repeat signature 689 703 IPR002110 GO:0005515
Vium5600g00022 833 ProSiteProfiles Ankyrin repeat region circular profile. 673 701 - -
Vium5600g00022 833 SUPERFAMILY Voltage-gated potassium channels 76 324 - -
Vium5600g00022 833 FunFam Potassium channel KAT3 83 325 - -
Vium5600g00022 833 MobiDBLite consensus disorder prediction 20 36 - -
Vium5600g00022 833 SUPERFAMILY Ankyrin repeat 507 704 IPR036770 -
Vium5600g00022 833 SMART cnmp_10 401 518 IPR000595 -
Vium5600g00022 833 ProSiteProfiles Ankyrin repeat profile. 576 608 IPR002110 GO:0005515
Vium5600g00022 833 ProSiteProfiles Ankyrin repeat profile. 673 705 IPR002110 GO:0005515
Vium5600g00022 833 Pfam Ion transport protein 82 330 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium5600g00022 833 ProSiteProfiles Ankyrin repeat region circular profile. 576 607 - -
Vium5600g00022 833 ProSiteProfiles KHA domain profile. 760 833 IPR021789 -
Vium5600g00022 833 ProSiteProfiles cAMP/cGMP binding motif profile. 401 520 IPR000595 -
Vium5600g00022 833 Gene3D - 82 324 - -
Vium5600g00022 833 SUPERFAMILY cAMP-binding domain-like 328 520 IPR018490 -
Vium5600g00022 833 MobiDBLite consensus disorder prediction 1 36 - -
Vium5600g00022 833 Pfam Cyclic nucleotide-binding domain 421 504 IPR000595 -
Vium5600g00022 833 Gene3D - 545 720 IPR036770 -
Vium5600g00022 833 Pfam KHA, dimerisation domain of potassium ion channel 760 831 IPR021789 -
Vium5600g00022 833 PRINTS EAG/ELK/ERG potassium channel family signature 129 138 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium5600g00022 833 PRINTS EAG/ELK/ERG potassium channel family signature 297 308 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium5600g00022 833 PRINTS EAG/ELK/ERG potassium channel family signature 315 324 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium5600g00022 833 PRINTS EAG/ELK/ERG potassium channel family signature 118 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium5600g00022 833 PRINTS EAG/ELK/ERG potassium channel family signature 271 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium5600g00022 833 Gene3D Jelly Rolls 368 543 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5600g00022 Vium-Chr5600 99447 104513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5600g00022 1 581 Ion Channels AT4G22200 69.847 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5600g00022 K21867 - gmx:100798422 1463.74