Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5600g00018 ATGTGTTGTTTGGTTGCTACTCAAATGAGACCAGGTGAAACCAATTCAGTTCGCGTTGATAAAGAGAATAACAGGGACTGGTTGCGGCATGCCAATGCTCATGAGAATTTCTCCTCCCAAGAGAAGTTTTTGAGCTCTAATTTTCTGTTCTCTGTTCCGCCCAAGAAGCCCCGCCACCAAGAACCGAACCCTGAGACTGCCGGGTTTGTTTTTCAACGAAGTGAAAATATTCAAGTTTCACAGAGAGTACAATTTGACAAGGCTTGGGATGCTCTTTCAAGTCTACAAAATTCTAGTAGGAACTATGTACAACCTGGAAAAACTGTCAATGTTAATTGTCAGAGTCATGAGAATACGAGAACAGCACCAATCCATGGAGGCTATCAGAATGACAACCGTATGTGTCCTGATGTCACTGACATTCCAGCTAGCAGAAATACTTCTTGGGGTTTGGATGGTTCATTGAACAATCATAATAAGTACACAGGCCAAATCAACGAGTCTTCTAACTGCATGTCTGGAGATATTGATGATGATAACATACTTGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAATCGACCTGCACTCCTAAGCCGTCAATATCCAAGTTTCCTCCTGTAACACCAAATGCAGATAAAGATGGATTTGCTAGACAGGGGGATGATGTTTTGCCACCAGACCTGTGTTTAGATTGCATCCATGGGTACAAGCTAGGGCTTTGCCCTGAAGCAGCAATTCATTTGCAGGAATTGAAGGATAATCTAATTGCAATCTCTAATGAACTGCTCGACAATTGTGAAACCCTCAATTCTACACAGATATCAAAGCTTCGCCATGATAGGTCACAGCTGAATAAGCAAATTCAGCAACTAGAAAAATATACTCAATCAAGTAATCTTAACGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCATTCGCATCATATGTGTATGAAACACCTCAGCAAACTGGTGCCTGTAATGGATCCAAGCAATACGATACTCAGGCTTATATGGGTAATGGGACATGTGGTTCAACATTCCAGTCTCTTCCATCTTTTTCTGTAGACAATTATAGCACATCATCAGGCCCGGTGGAGCGGGAAGAGTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCACGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAGGTATTTGGAAATCATTCCTTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACTTATCAGTTACCGGCTCTTGTTTGTCATGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAGGATCAAATAATGCACTTACTGCAGGCAAATATACCAGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAGATCCTCCGAGAACTTAATTCTGATTACTGTAAATACAAGTTATTATATGTGACACCTGAAAAAGTTGTCAAAAGTGATAATCTTTTGCGACACTTAGAGAATTTACATTTTCGTGAGCTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTTCCAAATACTCCAGTTTTAGCTTTAACAGCTACAGCAACTGCTAGCGTAAAAGAAGATGTCGTGCAAGCACTTGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCCAAGACCAAAAAGTGTTTGGAAGACATTGACAAATTCATTAGAGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGATTGTGAAAAGGTCGCTAGCAATTTGCAGGAATTTGGACATAAATGTGCATTTTATCATGGTACCATGGATCCTGCTCAACGTGCCTTTGTTCAAAAACAGTGGAGCAAAGATGAAATCAATATAATTTGTGCTACAGTAGCATTTGGAATGGGTATTAATAAACCCGATGTCCGCTTTGTAATTCACCATTCTCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGCCGAGCTGGTAGAGATGGTCAACGTTCGTCTTGTGTATTATATTATAATTATAGTGATTATATACGAGTCAAGCATATGATAAGTCAAGGATCAATAGAGCAAAGTCCCATGGCATCTGGATACAATCGTTCAAATATGATAAATCCTGGAAGCATACTAGAAACAAACACTGAAAACCTTATGCGAATGGTTAGTTATTGTGAAAATGAGGTCGACTGTCGGCGCCTTCTGCAGCTTGTTCATTTTGGGGAGAAGTTTAATTCTTCAACTTGTCACAAAACGTGTGATAATTGCTTGAAGATCACAAATTTCATTGAGAAGGATGTCACAGAGATAGCAAAGCAATTGGTTGAACTTGTTAAGCTAACGGGACAGAGGTTCTCATCATCTCATATATTAGAAGTCTATCGTGGTTCCTTTAGCCAAATGGTCAAGAAAAATCGCCATGAGACAGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGAATATTGCATCATCTTGTTGTTGAGGATATTCTTGTGGAAGAAGTAAAGAAAAGTGATTATTATGGATCGGTATCGTCAATATTGAAGGTAAATGAGCTCAAGGTCTGTAATCTGTTTGCTGGGCACAGAATTATATTGAGATTCCCATCGTCTGTAAAGGCATTAAAACCAGGGAAATCTGATGCAACTCCAGCCAAGGGTTCTTTGACATCTGGGAAGCCGAATGTTATTCCAACTAACGCTCCTCAGCCTCAAACTGAAGTGGATTTGAATCTTTCAGCCAAGTTATACACTGCTCTGCGTATGTTGAGGACAACTCTTGTTAAAGAAGCTGGAGATAGTGTTTTTGCTTACCACATATTTGGTAATGCCACGTTGCAGCAGATGAGCAAGAGAGTGCCGAGAACGAAAGAAGAACTCCTTGATATCAATGGCATTGGCAAGGCAAAGGTAAGCAAGTATGGGGATGAGATACTGGAAACCATTGAGAATACCATAAATGAATATTACAAATTGGACAAAGCCAGTAGCGGCAGCAAAGGTAGTGCAGATTCTGCTAAAAGGAGACGAGAGTCAAATGGAGATCCATATGCAAATGCTGAGGACGATGACGCCCTCACCAATAGTACAGGTCGTTCTAAGAAAAGGACTATAAAGAGACAAAATAAAAAAGCTGTGATATATGATTCTGCAGAGGAAGATTATTTTTCTGGATGCCATGATGAAGACCTAGACTTTGACCTCATAGAAATTGATGCATTAGATCAGGTGACTTGTAAAAATGCTTCTGGGAGAGTACTACCTCAATGGACAACATCTTGA 3507 0.4021 MCCLVATQMRPGETNSVRVDKENNRDWLRHANAHENFSSQEKFLSSNFLFSVPPKKPRHQEPNPETAGFVFQRSENIQVSQRVQFDKAWDALSSLQNSSRNYVQPGKTVNVNCQSHENTRTAPIHGGYQNDNRMCPDVTDIPASRNTSWGLDGSLNNHNKYTGQINESSNCMSGDIDDDNILENIDVDQIVEKYQSTCTPKPSISKFPPVTPNADKDGFARQGDDVLPPDLCLDCIHGYKLGLCPEAAIHLQELKDNLIAISNELLDNCETLNSTQISKLRHDRSQLNKQIQQLEKYTQSSNLNEERQKSHFSASTAPFASYVYETPQQTGACNGSKQYDTQAYMGNGTCGSTFQSLPSFSVDNYSTSSGPVEREEFIPKIIEVNYIEGSGDKRWSSHDFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALVCHGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVVKSDNLLRHLENLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVASNLQEFGHKCAFYHGTMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMISQGSIEQSPMASGYNRSNMINPGSILETNTENLMRMVSYCENEVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHETVSLHGAGKHLAKGEASRILHHLVVEDILVEEVKKSDYYGSVSSILKVNELKVCNLFAGHRIILRFPSSVKALKPGKSDATPAKGSLTSGKPNVIPTNAPQPQTEVDLNLSAKLYTALRMLRTTLVKEAGDSVFAYHIFGNATLQQMSKRVPRTKEELLDINGIGKAKVSKYGDEILETIENTINEYYKLDKASSGSKGSADSAKRRRESNGDPYANAEDDDALTNSTGRSKKRTIKRQNKKAVIYDSAEEDYFSGCHDEDLDFDLIEIDALDQVTCKNASGRVLPQWTTS 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5600g00018 1168 CDD DEXHc_RecQ 410 609 - -
Vium5600g00018 1168 SMART helicmild6 652 733 IPR001650 -
Vium5600g00018 1168 Gene3D - 383 609 IPR027417 -
Vium5600g00018 1168 ProSiteProfiles HRDC domain profile. 985 1067 IPR002121 GO:0003676
Vium5600g00018 1168 FunFam Bloom syndrome, RecQ helicase 610 830 - -
Vium5600g00018 1168 SMART ultradead3 415 618 IPR014001 -
Vium5600g00018 1168 MobiDBLite consensus disorder prediction 952 978 - -
Vium5600g00018 1168 SMART RQC_2 835 945 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vium5600g00018 1168 FunFam ATP-dependent DNA helicase RecQ 392 609 - -
Vium5600g00018 1168 SMART hrdc7 985 1067 IPR002121 GO:0003676
Vium5600g00018 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 876 IPR027417 -
Vium5600g00018 1168 Coils Coil 277 297 - -
Vium5600g00018 1168 CDD SF2_C_RecQ 610 742 - -
Vium5600g00018 1168 MobiDBLite consensus disorder prediction 959 978 - -
Vium5600g00018 1168 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 627 788 IPR001650 -
Vium5600g00018 1168 Gene3D HRDC domain 984 1073 IPR044876 -
Vium5600g00018 1168 PANTHER DNA HELICASE RECQ FAMILY MEMBER 390 1075 - -
Vium5600g00018 1168 Pfam DEAD/DEAH box helicase 421 589 IPR011545 GO:0003676|GO:0005524
Vium5600g00018 1168 NCBIfam RecQ family ATP-dependent DNA helicase 411 886 IPR004589 GO:0004386|GO:0006310
Vium5600g00018 1168 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 427 602 IPR014001 -
Vium5600g00018 1168 Pfam RecQ zinc-binding 744 826 IPR032284 -
Vium5600g00018 1168 FunFam ATP-dependent DNA helicase Q-like 4A 981 1067 - -
Vium5600g00018 1168 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 541 550 IPR002464 -
Vium5600g00018 1168 MobiDBLite consensus disorder prediction 1070 1117 - -
Vium5600g00018 1168 Pfam RQC domain 832 944 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vium5600g00018 1168 Pfam Helicase conserved C-terminal domain 626 732 IPR001650 -
Vium5600g00018 1168 Gene3D - 610 828 IPR027417 -
Vium5600g00018 1168 SUPERFAMILY HRDC-like 988 1061 IPR010997 GO:0000166|GO:0044237
Vium5600g00018 1168 Gene3D - 833 942 IPR036388 -
Vium5600g00018 1168 Pfam HRDC domain 989 1057 IPR002121 GO:0003676
Vium5600g00018 1168 MobiDBLite consensus disorder prediction 1078 1092 - -
Vium5600g00018 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 751 IPR027417 -
Vium5600g00018 1168 FunFam ATP-dependent DNA helicase Q-like 4A 833 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5600g00018 Vium-Chr5600 62936 70410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5600g00018 641 764 Eukaryotic Initiation Factors Gene Family AT3G19760 23.622 1.91e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5600g00018 K10901 - gmx:100800006 1897.48