Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5600g00016 ATGGAGTATGCAGCTGGTGGAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGTGAAGATGAGGGTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGCAAATCTGTCATCGAGACTTGAAGCTTGAAAACACCTTATTGGATGGCAGCCCTGCCCCACGGCTCAAAATTTGTGATTTTGGTTACTCTAAGTCATCCCTGCTTCATTCAAGGCCTAAGTCAACTGTGGGAACCCCAGCCTACATTGCGCCTGAGGTTCTTTCACGCAGAGAATACGATGGAAAGCTAGCTGATGTATGGTCCTGTGGAGTGACTCTTTATGTAATGTTGGTGGGAGCATACCCATTTGAAGACCAAGACGATCCCAAAAATTTTAGGAAAACCATCAATAGAATTATGGCTGTTCAATACAAGTTCCCCGACTATGTTCACATATCTCAAGACTGCAGACATATGCTATCTCGCATTTTTGTTGCAAATCCGGCTAGGAGAATTACCATTAAGGAAATCAAGTCCCACCCATGGTTTCTAAAGAACTTGCCTAGAGAATTAACAGAAGTAGCTCAAGCTGCCTACTACAGAAAAGAAAATCCAACCTTTTCACTTCAGAGTATAGAGGACATCATGAATATTGTTGAGGAGGCCAAGATTCCACCTCCGGCGTCCAGGTCAGTTGGAGGATTTGGTTGGGGGGGAGAAGAAGATGAGGATGAAACAAAAGAAGCAGAGGTTGAGGCTGAGGAAGATGAGTATGAAAAGAGAGTCAAAGAAGCACAAGCAAGCGGGGAATTTCATGTTAGTTAG 828 0.442 MEYAAGGELFERICSAGRFSEDEGRYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINRIMAVQYKFPDYVHISQDCRHMLSRIFVANPARRITIKEIKSHPWFLKNLPRELTEVAQAAYYRKENPTFSLQSIEDIMNIVEEAKIPPPASRSVGGFGWGGEEDEDETKEAEVEAEEDEYEKRVKEAQASGEFHVS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5600g00016 275 MobiDBLite consensus disorder prediction 228 275 - -
Vium5600g00016 275 Pfam Protein kinase domain 1 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00016 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
Vium5600g00016 275 FunFam Serine/threonine-protein kinase SRK2A 4 192 - -
Vium5600g00016 275 PANTHER SERINE/THREONINE KINASE 1 222 - -
Vium5600g00016 275 Gene3D Transferase(Phosphotransferase) domain 1 1 226 - -
Vium5600g00016 275 SMART serkin_6 1 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00016 275 Coils Coil 249 269 - -
Vium5600g00016 275 SUPERFAMILY Protein kinase-like (PK-like) 1 219 IPR011009 -
Vium5600g00016 275 ProSiteProfiles Protein kinase domain profile. 1 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00016 275 MobiDBLite consensus disorder prediction 239 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5600g00016 Vium-Chr5600 50397 53228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5600g00016 1 187 CBL-interacting serine-threonine protein kinases AT4G24400 46.354 2.26e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium5600g00016 Pkinase 6.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5600g00016 K14498 - gmx:100812259 494.197