Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5600g00015 ATGGAGAAGTACGAGCTCGTCAAGGATATAGGATCTGGGAATTTTGGGGTGGCAAGGCTCATGCGGCACAAAGAAACCAAGGAGCTTGTTGCCATGAAATACATTGAAAGGGGTCACAAGATTGATGAGAATGTTGCCAGGGAAATCATAAACCATAGAAGTCTTCGCCACCACAATATTATTCGGTTCAAGGAGGTGGTTTTGACTCCTACTCATCTGGGCATTGTTATGGAGTATGCAGCTGGTGGAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGTGAAGATGAGGGTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGCAAATCTGTCATCGAGACTTGAAGCTTGAAAACACCTTATTGGATGGCAGCCCTGCCCCACGGCTCAAAATTTGTGATTTTGGTTACTCTAAGTCATCCCTGCTTCATTCAAGGCCTAAGTCAACTGTGGGAACCCCAGCCTACATTGCGCCTGAGGTTCTTTCACGCAGAGAATACGATGGAAAGCTAGCTGATGTATGGTCCTGTGGAGTGACTCTTTATGTAATGTTGGTGGGAGCATACCCATTTGAAGACCAAGACGATCCCAAAAATTTTAGGAAAACCATCAATAGAATTATGGCTGTTCAATACAAGTTCCCCGACTATGTTCACATATCTCAAGACTGCAGACATATGCTATCTCGCATTTTTGTTGCAAATCCGGCTAGGAGAATTACCATTAAGGAAATCAAGTCCCACCCATGGTTTCTAAAGAACTTGCCTAGAGAATTAACAGAAGTAGCTCAAGCTGCCTACTACAGAAAAGAAAATCCAACCTTTTCACTTCAGAGTATAGAGGACATCATGAATATTGTTGAGGAGGCCAAGATTCCACCTCCGGCGTCCAGGTCAGTTGGAGGATTTGGTTGGGGGGGAGAAGAAGATGAGGATGAAACAAAAGAAGCAGAGGTTGAGGCTGAGGAAGATGAGTATGAAAAGAGAGTCAAAGAAGCACAAGCAAGCGGGGAATTTCATGTTAGTTAG 1056 0.4432 MEKYELVKDIGSGNFGVARLMRHKETKELVAMKYIERGHKIDENVAREIINHRSLRHHNIIRFKEVVLTPTHLGIVMEYAAGGELFERICSAGRFSEDEGRYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINRIMAVQYKFPDYVHISQDCRHMLSRIFVANPARRITIKEIKSHPWFLKNLPRELTEVAQAAYYRKENPTFSLQSIEDIMNIVEEAKIPPPASRSVGGFGWGGEEDEDETKEAEVEAEEDEYEKRVKEAQASGEFHVS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5600g00015 351 PANTHER SERINE/THREONINE KINASE 2 297 - -
Vium5600g00015 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vium5600g00015 351 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00015 351 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vium5600g00015 351 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Vium5600g00015 351 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium5600g00015 351 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vium5600g00015 351 CDD STKc_SnRK2 3 259 - -
Vium5600g00015 351 MobiDBLite consensus disorder prediction 315 330 - -
Vium5600g00015 351 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00015 351 Coils Coil 325 345 - -
Vium5600g00015 351 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vium5600g00015 351 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00015 351 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
Vium5600g00015 351 MobiDBLite consensus disorder prediction 304 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5600g00015 Vium-Chr5600 50028 53228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5600g00015 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 42.963 2.14e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium5600g00015 Pkinase 1e-70 CL0016