Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5600g00014 ATGGAGAAGTACGAGCTCGTCAAGGATATAGGATCTGGGAATTTTGGGGTGGCAAGGCTCATGCGGCACAAAGAAACCAAGGAGCTTGTTGCCATGAAATACATTGAAAGGGGTCACAAGATTGATGAGAATGTTGCCAGGGAAATCATAAACCATAGAAGTCTTCGCCACCACAATATTATTCGGTTCAAGGAGGTGGTTTTGACTCCTACTCATCTGGGCATTGTTATGGAGTATGCAGCTGGTGGAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGTGAAGATGAGGGTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGCAAATCTGTCATCGAGACTTGAAGCTTGAAAACACCTTATTGGATGGCAGCCCTGCCCCACGGCTCAAAATTTGTGATTTTGGTTACTCTAAGTCATCCCTGCTTCATTCAAGGCCTAAGTCAACTGTGGGAACCCCAGCCTACATTGCGCCTGAGGTTCTTTCACGCAGAGAATACGATGGAAAGCTAGCTGATGTATGGTCCTGTGGAGTGACTCTTTATGTAATGTTGGTGGGAGCATACCCATTTGAAGACCAAGACGATCCCAAAAATTTTAGGAAAACCATCAATAGAATTATGGCTGTTCAATACAAGTTCCCCGACTATGTTCACATATCTCAAGACTGCAGACATATGCTATCTCGCATTTTTGTTGCAAATCCGGCTAGGGTATGCACATACTGCCTGCAAAAGATATTACTTGAAGTTGGCTCATAA 789 0.4436 MEKYELVKDIGSGNFGVARLMRHKETKELVAMKYIERGHKIDENVAREIINHRSLRHHNIIRFKEVVLTPTHLGIVMEYAAGGELFERICSAGRFSEDEGRYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINRIMAVQYKFPDYVHISQDCRHMLSRIFVANPARVCTYCLQKILLEVGS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5600g00014 262 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00014 262 ProSiteProfiles Protein kinase domain profile. 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00014 262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vium5600g00014 262 PIRSF ILK 1 250 - -
Vium5600g00014 262 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vium5600g00014 262 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium5600g00014 262 Pfam Protein kinase domain 4 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5600g00014 262 CDD STKc_SnRK2 3 250 - -
Vium5600g00014 262 PANTHER SERINE/THREONINE KINASE 2 250 - -
Vium5600g00014 262 Gene3D Transferase(Phosphotransferase) domain 1 80 257 - -
Vium5600g00014 262 SUPERFAMILY Protein kinase-like (PK-like) 1 250 IPR011009 -
Vium5600g00014 262 FunFam Serine/threonine-protein kinase SRK2A 80 257 - -
Vium5600g00014 262 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5600g00014 Vium-Chr5600 50015 52856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5600g00014 3 250 CBL-interacting serine-threonine protein kinases AT2G26980 41.313 1.13e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium5600g00014 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5600g00014 K14498 - gmx:100809324 495.738