Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5600g00001 ATGATGTCTGAAGATGCTGGATCTATGTTGGTAGTTTATGATGATCCCTCGGACCAACGCTCACTATCTTTGGATGATGCAAGCAGCACTGAGGAGTCACCCGATGAAACGAGGCTCTCCTTGGAAACAACACATGATGCTATTCCATACATTGGCCAAAGGTTTGCCACTCATGATGCTGCTTATGAATTCTATAGTGAATTTGCCAAAAGGAGTGGCTTCTCAATTAGACGTCACCGTACAGAAGGAAAAGATGGTGTTGGAAAAGGACTTACTAGGCGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGTCAAAACATCAACTGAAAGCAAACCTCAAAGAAATAGAAAGTCTTCTCGCTGTGGGTGTCAGGCTTATATGCGTATTAGCAAAACAACAGAATTTGGAGCTCCAGAATGGCGTGTGACTGGTTTTGCTAACCACCATAATCATGAACTTTTAGAACCAAACCAAGTTCGATTTCTCCCTGCATACAGAACTATCTCGGATGTTGACAAAAATCGAATACTAATGTTTGCCAAAACAGGAATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACTGAAAAAGACGTAAGGAATTTACTCCAGTCATTTAGGAAATTAGATCCAGAAGAAGAAAGCTTAGATTTATTAAGAATGTGCAGAAATATTAAGGAGAAAGACCCTAATTTTAAATTTGACTACACACTTGATGCAAACAATCGTTTGGAGAATATTGCTTGGTCTTATGCTTCATCAATCCAATGGTACGATATCTTCGGTGATGCAGTGGTGTTTGATACAACACACCGGCTGACTGCTTTTGACATGCCGCTAGGGATATGGGTTGGAATAAATAATTATGGAATGCCTTGCTTTTTTGGCTGCACACTTTTACGGGATGAAACTGTGAGATCGTTTTCCTGGGCACTAAAGGCTTTCTTAGGGTTCATGAATGGAAAGGCTCCACAAACTATATTAACCGACCAAAATATATGTCTCAAAGAAGCACTATCCACAGAAATGCCTACAACAAAACACGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTTAATGCTGTTCTAGGGGAACGGTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAGTCAGTTGAGGATTTTGATCTAGGTTGGAGGGAAATGGTTTGTTCTTTTGGGCTGCACTCCAATCGGCACATGGTTAATTTATATAGTTCACGCTCTCTTTGGGCGTTGCCATTTTTGAGAAGCCATTTTCTTGCTGGAATGACTTCAACTGGTCAGTCAAAGTCAATCAATGCTTTCATTCAACGATTTCTGAGTGCACAAACTCGCCTTGCACACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTTGCCTCAAAACAGGGGCCCCTATGGAATCACACGCTGCCACAATCCTCACTCCTTTTGCCTTTTCAAAGCTCCAAGAACAACTTGTACTGGCTGCACATTATGCATCGTTTCCAATTGAAGATGGTTTTCTTGTGAGGCACCACACCAAAGCTGAGGGAGGTCGGAAAGTTTATTGGGCCCCTCAAGAAGGAATTATAAGTTGTAGCTGCCATCAGTTCGAGTTCACTGGTATTCTTTGTCGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAGATTCCAGATGGATATCTTCCTATTCGATGGCGTCGCATAAGCATGCCCTCTTCTAAGCTTCTTCAAAGTGCGCCAAACGATCATGCCGAGAGAGTTAAGTTACTACAAAACATGGTTTCATCTCTGATGACAGAATCTGCTAAATCTAAGGAACGGTTAGATATTGCAACAGAACATGTTTCTATCCTTCTGTCTCGCTTAAGAGAGCAACCAATTTCTTTGCAAGGTGGTCGAGAGTCCCAGAATTAG 2028 0.4137 MMSEDAGSMLVVYDDPSDQRSLSLDDASSTEESPDETRLSLETTHDAIPYIGQRFATHDAAYEFYSEFAKRSGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDVDKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFDYTLDANNRLENIAWSYASSIQWYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCTLLRDETVRSFSWALKAFLGFMNGKAPQTILTDQNICLKEALSTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFDLGWREMVCSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTSTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATILTPFAFSKLQEQLVLAAHYASFPIEDGFLVRHHTKAEGGRKVYWAPQEGIISCSCHQFEFTGILCRHSLRVLSTGNCFQIPDGYLPIRWRRISMPSSKLLQSAPNDHAERVKLLQNMVSSLMTESAKSKERLDIATEHVSILLSRLREQPISLQGGRESQN 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5600g00001 675 Pfam MULE transposase domain 279 371 IPR018289 -
Vium5600g00001 675 Pfam SWIM zinc finger 561 588 IPR007527 GO:0008270
Vium5600g00001 675 ProSiteProfiles Zinc finger SWIM-type profile. 554 590 IPR007527 GO:0008270
Vium5600g00001 675 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 654 IPR031052 GO:0006355
Vium5600g00001 675 SMART 26again6 565 592 IPR006564 GO:0008270
Vium5600g00001 675 MobiDBLite consensus disorder prediction 1 43 - -
Vium5600g00001 675 Pfam FAR1 DNA-binding domain 63 156 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5600g00001 Vium-Chr5600 18 3840 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium5600g00001 MULE 2.2e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5600g00001 - - gmx:100810717 1333.93