Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5596g00004 ATGCCTACATGGTGGGGGAAATCATCGTCAAAAGAAACCAAGAAGAAAGCAAATAAGGAAAGTTTTATCAATTCATTTCACCGCAGATTTAAAATCCCATCTGAAAGTAAATCAAGCAGTAGATCTGGAGGATCTCGTAGACATTGCAATGATTCAATTTCTGAGAAAGGGGCTCAGTCTCCTCCTGAATCAAGATCTCCGTCACCTTCCAAAGTGGCAAGGTGTCAAAGTTTTGCTGAAAGGCCTCATGCTCAGCCGCTACCACTTCCTGTCCTGCACCCATCAAATATAAGCCGGGCAGACTCTGAAATTAGCATATCAGCTAAATCAAGACTTGAAAAAGGCTCCAAACCATCATTGTTTCCACTACCAAAACCAGCATGCATGCGTGGTAGGTTGAACCCTGCAGATTTGGATGGAGACCTGGTCACTGCTTCAGTCTCTAGTGAGAGCTCTGCTGACAGTGATGAGCCAGTGGACTCTCGCAATCTTAGTCCTTTGGCAACTGACTGTGAAAACGGGGCTAGAACTGCTGCAGGCTGTCCTTCCAGCTCGATGCCCAAGGATCTATCATCTACTGTTTCCCAAATAAATTCAAGAGAAACCAAAAAACCGGCAAACATTCTGGGTAATCACATGTCTTCTACTTCACCAAAACGGAGGCCTTTAAGCAACCATGTTTCAAATTTGCAGATTCCTCCTCATGGTGCCTTCTGCAGTGCACCTGATAGTTCCAAATCAAGTCCGTCTAGAAGTCCATTGAGAGTATTTGGCACTGAACAGGTGTTGAACTCTGCTTTTTGGGCCGGAAAGCCATATTCGGAGGTCAATTTAGGTGGATCTGGGCACTGCTCAAGTCCAGGTTCTGGTCACAATTCTGGACATAATTCAATGGGAGGAGACATGTCTGGACAGTTATTTTGGCAACCTAGCAGGGGTAGCCCTGAATATTCTCCTGTACCTAGTCCCCGAATGACTAGCCCTGGACCTAGCTCTAGAATTCAGAGTGGTGCAGTTACACCTATTCATCCTAGAGCTGGGGGAACACTCAATGAATCACAGACAGGACGGGTTGATGATGGAAAACAACAGAGTCATCGTTTGCCCCTTCCTCCTTTAGCAGTTACCAATATTTTACCTTTCTCTCATTCAAATTCTGCAGCAACTTCTCCATCCATGCCAAGAAGTCCGGGAAGGGCAGATAATCCAATAAGCCCTGGATCACGTTGGAAAAAAGGAAAACTGCTTGGCAGAGGCACATTTGGACATGTCTTTGTTGGCTTTAATAAGGAAAGTGGTGAAATGTGTGCTATGAAAGAGGTGACTCTGTTTTCAGATGATGCCAAATCTAAAGAAAGTGCTAAGCAATTAATGCAGGAAATTGCCTTATTAAGTCGATTGCGGCATTCAAATATTGTGCAGTACTATGGTTCTGAAACAGTCGGTGACAAGCTTTACATATATCTGGAGTATGTCGCTGGAGGCTCCATATATAAACTTCTTCAAGAGTATGGACAATTTGGTGAACTAGCTATTCGTAGTTTTACACAACAAATTTTGTCCGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGGGACATCAAAGGAGCAAATATACTGGTAGATACTAACGGTCGGGTTAAGTTGGCGGACTTTGGCATGGCAAAACATATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCCTATTGGATGGCTCCTGAGGTTATAAAAAACTCCAATGGTTGCAACCTTGCCGTTGATATATGGAGCCTGGGATGCACAGTTTTGGAAATGGCTACAACTAAACCTCCTTGGAGTCAGTATGAAGGGGTTGCTGCAATGTTCAAGATTGGTAATAGCAAGGAACTCCCAGCAATCCCGGATCACCTATCTAGTGAAGGAAAGGATTTTGTTAGGAAATGTCTCCAACGGAATCCACACAATCGCCCTTCGGCAAGTGAATTATTGGACCACCCTTTTGTAAAATATGCTGCACCTTTAGAGAGACCTATTCTAGGTCCTGATGCTTCTTCAGACCCAGCCGTATCTGGGATCACACAGGGAGCTACAGCTCTGGGTATTGGACAAGGAAGGAGTCCTTCTACATTGGATTCAGATAGACTTTCCCGTCACTCTTCTAGGTTTTTGAAAAGTAATCCTCATGCAAGTGAAATCCATATTCCGAGGAATATATCCTGCCCTGTCTCACCCATTGGAAGCCCACTTTTGAGGCCAAGATCGCCACAACATATGAATGGGAGAATGTCTCCCTCTCCTATATCCAGTCCTCGGACTGCTTCTGGTGCATCCACACCTCTCAACGGTGGTAGTGGTGCCATTCCATTCAGTAATCACTTAGTTTACATTCAAGAGGGTCTTGGAAACTTGCCGAAGTCCTCAAATGGTGTCTACATTAGTGGCCCTACTCATCATGACTTGAATCTTGACATTTTTCGAGGAATGCAACAGGCGCCTCACATTTCATCAGAACTGGTTCCAGGTGAAAGTGATGTTCTAGGGAAGCAGTTTGCACGGTCTCCTCGTAACGAGGCATATGATGTTCAATCAGTCTTGGCTGATCGTGTTTGTCGGCAGCTACTGGGGGATAATGGGAAAATCAACCCATCCCTTGATCTAAATCCCAATTCTTTGCTCAGCCGGGCTAATGGTTTATGA 2691 0.4463 MPTWWGKSSSKETKKKANKESFINSFHRRFKIPSESKSSSRSGGSRRHCNDSISEKGAQSPPESRSPSPSKVARCQSFAERPHAQPLPLPVLHPSNISRADSEISISAKSRLEKGSKPSLFPLPKPACMRGRLNPADLDGDLVTASVSSESSADSDEPVDSRNLSPLATDCENGARTAAGCPSSSMPKDLSSTVSQINSRETKKPANILGNHMSSTSPKRRPLSNHVSNLQIPPHGAFCSAPDSSKSSPSRSPLRVFGTEQVLNSAFWAGKPYSEVNLGGSGHCSSPGSGHNSGHNSMGGDMSGQLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAGGTLNESQTGRVDDGKQQSHRLPLPPLAVTNILPFSHSNSAATSPSMPRSPGRADNPISPGSRWKKGKLLGRGTFGHVFVGFNKESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHSNIVQYYGSETVGDKLYIYLEYVAGGSIYKLLQEYGQFGELAIRSFTQQILSGLAYLHAKNTVHRDIKGANILVDTNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPAIPDHLSSEGKDFVRKCLQRNPHNRPSASELLDHPFVKYAAPLERPILGPDASSDPAVSGITQGATALGIGQGRSPSTLDSDRLSRHSSRFLKSNPHASEIHIPRNISCPVSPIGSPLLRPRSPQHMNGRMSPSPISSPRTASGASTPLNGGSGAIPFSNHLVYIQEGLGNLPKSSNGVYISGPTHHDLNLDIFRGMQQAPHISSELVPGESDVLGKQFARSPRNEAYDVQSVLADRVCRQLLGDNGKINPSLDLNPNSLLSRANGL 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5596g00004 896 MobiDBLite consensus disorder prediction 283 312 - -
Vium5596g00004 896 MobiDBLite consensus disorder prediction 756 781 - -
Vium5596g00004 896 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Vium5596g00004 896 MobiDBLite consensus disorder prediction 382 396 - -
Vium5596g00004 896 Gene3D Transferase(Phosphotransferase) domain 1 408 678 - -
Vium5596g00004 896 MobiDBLite consensus disorder prediction 382 409 - -
Vium5596g00004 896 MobiDBLite consensus disorder prediction 9 53 - -
Vium5596g00004 896 MobiDBLite consensus disorder prediction 283 368 - -
Vium5596g00004 896 MobiDBLite consensus disorder prediction 54 73 - -
Vium5596g00004 896 MobiDBLite consensus disorder prediction 695 714 - -
Vium5596g00004 896 SMART serkin_6 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5596g00004 896 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5596g00004 896 SUPERFAMILY Protein kinase-like (PK-like) 408 667 IPR011009 -
Vium5596g00004 896 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 58 679 - -
Vium5596g00004 896 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5596g00004 896 MobiDBLite consensus disorder prediction 178 231 - -
Vium5596g00004 896 MobiDBLite consensus disorder prediction 1 253 - -
Vium5596g00004 896 MobiDBLite consensus disorder prediction 741 781 - -
Vium5596g00004 896 CDD STKc_MEKK1_plant 409 666 - -
Vium5596g00004 896 FunFam Mitogen-activated protein kinase kinase kinase 408 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5596g00004 Vium-Chr5596 11165 19066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5596g00004 1 886 MAP Kinase Kinase Kinase AT1G63700 60.314 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium5596g00004 Pkinase 2.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5596g00004 K20717 - gmx:100819762 1588.93