Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5590g00021 ATGGAAACAATGAGATTGAAGGAGATGCAGAAGCAGCTGACCAGACTGACCGTGGTGTTATTGATGGCAGTAGCAGCAGCCAGCCAAGCCCTGCCCGGCTGCCCGAACTCCTGCGGAAGTGTTTCATCGATTCCGTATCCATTCGGCATCGGCACTTCAGACCTCACCGGTGAAAACTGTTTTTTGGAGATAGAATTGAATCTCACATGCACAAACTCAACCTTATATCGCGGTAAAGGTAACGTCCAAATTCTGAACATAACCCTCGACGGTAAAATCGACATGCTTGCTGGCATCTCCAAGGTCTGCAAAAACGAATTGCTAGGTGGAGTACAAACACAGGGAACCGATCCCTTTCTCATAACACCGGCTTTCGCCATTTCTAGTGAGGACAACAAGTTCGTGAGCGTAGGCTGCGACACCTACGGCTATCTCAACAGTTTCCAGAACGGCACAGAATCTTCAACGGGGTGCTTGACCCGATGCGACACCTTAGAGAGCGTTAAAAGCATGCAGAGAAGTGGAAACTGCACGGGCATAGGGTGTTGCCAGGTCGACATTCCTCCTGGGATGAACAACATCACTTTTCAAGCTTTCTCCTTCAACAATTTCAATTCCACTTCCAATTTTAACAAGTGTGGCTACTCCTTCGTCGTCAAAAACGGCAACTACACTTTCTCCGTCGATCATTTAAGCCTCCTCCCGTTCAATATGACACCTCTTGTCATGGATTGGAGCGTTGGAAGCGACACGTGCGAAGCTTCCATGCTCAGAGCAGATTATGCATGCAAGAGTCCTTATAGCGAGTGTGAGAACTCCCCGTTTGCATATGGTTACCGATGCAACTGTAAACCTGGGTTTCAGGGAAACGCGTACCTTCTCCATGGCTGCGAAGATATACCTGAGTGTAGTAGTAACAAACACACTTGCGATAGTGAAGATCATTGTCGTGAAACTCCGGGCTCTTTTGAATGTTTCTGTCCTGACGGACTTATTGGAAATGGGACAGAAGAAGGCGGAGGATGCCACCCAAGGCAGCAGGCCGATGCTTTTACGAAGATCGTCATCGGCGCAGGTGTAGGATTAGTTGCACTGTTCATAGGGGTTTCTTGGTTGTACTTGGTGTACCAGAAAAGGAAAGTTTTAAAATTAAAACAGAAGTTTTTTCAGCAGAACGGAGGCATAATTCTGAGACAACAACTATCCAAAAACGAAGACTCATCTCAGACCACTACAATTTTCAGTGCAGAGCAACTTAAGAAAGCCACCAACAATTTTGACGAGAGCTTAATCATAGGTAAAGGAGGTTATGGTACAGTTTTCAAAGGAGTTCTCTCAAACAACAAAGTTGTAGCTATCAAAAAGTCCAAGATAGTGGATCAGAACCAGGTGGAACAATTCATCAATGAGGTCATTATACTGTCACAGATCAATCACAGGAACGTGGTCAAACTCTTGGGATGTTGTCTGGAGACAGAAGTGCCTTTACTAGTCTATGAATTTGTTAACAATGGCACCCTTTATGATTATTTGCATAACCAAGGTCAGGGAGTCAATGTGTCATGGAAAACACGTCTAAGAATAGCTACAGAAGCAGCTGCAGCTCTATCATATTTGCACTCAGCAGCTTCCATACCCATCATCCACAGAGATGTGAAGACTGCTAACATACTCTTAGATGACACTTACACTGCCAAAGTCTCTGACTTTGGAGCTTCAAGATTGGTTCCACTTGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGGTATTTAGACCCTGAGTACATGCAATCAAGCCAGTTGACTGAAAAGAGTGATGTCTATAGCTTTGGGGTGGTTCTTGTAGAGTTGCTAACGGGGGAGAAACCTTTCTCTTTTGACAGGGCAGAAGAGAAAAGAAGTCTTACAGTTCACTTTCTATGTAGATTGAAAGAGGATCGTCTGTTTGATGTTGTTCAGGTAGGACTTTTGGATGAAGAAAACCAGCAAGAGATTATGCAGGTTGCTATTCTTGCTGCCAGATGCCTTAGACTTACAGGGGAGGAAAGGCCTAGCATGAAGGAAGTGACGATGGAATTAGAAGGAATAAAGCTTACAGAGAAACACCCTTGGGTCAATACAGGAAAGAACTTTGAGGAGAGTGAATACTTGCTTTATGAGGCACAAAGCTCTTATGAAAATGGTGATAATAGTAGTGGCCAACGGAATACTGGATATGATAGTTTGAGAGAACTTGAACTTATTGACTTTGGTAATGGAAGATGA 2274 0.4433 METMRLKEMQKQLTRLTVVLLMAVAAASQALPGCPNSCGSVSSIPYPFGIGTSDLTGENCFLEIELNLTCTNSTLYRGKGNVQILNITLDGKIDMLAGISKVCKNELLGGVQTQGTDPFLITPAFAISSEDNKFVSVGCDTYGYLNSFQNGTESSTGCLTRCDTLESVKSMQRSGNCTGIGCCQVDIPPGMNNITFQAFSFNNFNSTSNFNKCGYSFVVKNGNYTFSVDHLSLLPFNMTPLVMDWSVGSDTCEASMLRADYACKSPYSECENSPFAYGYRCNCKPGFQGNAYLLHGCEDIPECSSNKHTCDSEDHCRETPGSFECFCPDGLIGNGTEEGGGCHPRQQADAFTKIVIGAGVGLVALFIGVSWLYLVYQKRKVLKLKQKFFQQNGGIILRQQLSKNEDSSQTTTIFSAEQLKKATNNFDESLIIGKGGYGTVFKGVLSNNKVVAIKKSKIVDQNQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLYDYLHNQGQGVNVSWKTRLRIATEAAAALSYLHSAASIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPLDQTEIATIVQGTFGYLDPEYMQSSQLTEKSDVYSFGVVLVELLTGEKPFSFDRAEEKRSLTVHFLCRLKEDRLFDVVQVGLLDEENQQEIMQVAILAARCLRLTGEERPSMKEVTMELEGIKLTEKHPWVNTGKNFEESEYLLYEAQSSYENGDNSSGQRNTGYDSLRELELIDFGNGR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5590g00021 757 Gene3D Laminin 249 340 - -
Vium5590g00021 757 CDD STKc_IRAK 432 699 - -
Vium5590g00021 757 SMART egf_5 251 298 IPR000742 -
Vium5590g00021 757 SMART egf_5 302 343 IPR000742 -
Vium5590g00021 757 FunFam Fibrillin 2 294 338 - -
Vium5590g00021 757 ProSitePatterns Protein kinases ATP-binding region signature. 432 455 IPR017441 GO:0005524
Vium5590g00021 757 Gene3D Transferase(Phosphotransferase) domain 1 502 718 - -
Vium5590g00021 757 FunFam Wall-associated receptor kinase 2 396 501 - -
Vium5590g00021 757 Pfam Protein kinase domain 430 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5590g00021 757 SUPERFAMILY EGF/Laminin 299 335 - -
Vium5590g00021 757 ProSiteProfiles EGF-like domain profile. 299 337 IPR000742 -
Vium5590g00021 757 SMART serkin_6 426 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5590g00021 757 Gene3D Phosphorylase Kinase; domain 1 392 501 - -
Vium5590g00021 757 CDD EGF_CA 299 333 - -
Vium5590g00021 757 SUPERFAMILY Protein kinase-like (PK-like) 406 697 IPR011009 -
Vium5590g00021 757 ProSiteProfiles Protein kinase domain profile. 426 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5590g00021 757 Pfam EGF domain 303 336 IPR024731 -
Vium5590g00021 757 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 703 IPR045274 GO:0007166
Vium5590g00021 757 FunFam Wall-associated receptor kinase 2 502 719 - -
Vium5590g00021 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5590g00021 Vium-Chr5590 90268 93748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5590g00021 16 757 Receptor kinase-like Gene Family AT1G21230 43.634 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium5590g00021 Pkinase 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5590g00021 - - gmx:100819535 1107.05