Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium558g00005 ATGGAGGGAAAAGAAGAGGATGTGAGAGTTGGAGCAAACAGATATGGGGAGAGGCAACCGATAGGAACTTCTGCGCAGGTGCAAGATACCAAAGACTACAGAGAGCCACCCTCTGCGCCTCTCTTTGAGCCTGGAGAATTGTCATCGTGGTCTTTCTATAGGGCTGGCATAGCAGAGTTTGTGGCCACCTTCTTGTTCCTTTACATTACAGTCTTAACTGTCATGGGTGTGGCCAAATCAGACTCCAAGTGCTCCACCGTGGGCATCCAAGGCATTGCTTGGGCTTTTGGGGGAATGATCTTTGCTCTTGTTTACTGCACTGCTGGTATCTCAGGGGGTCATATTAACCCAGCAGTGACATTTGGGCTGTTCTTGGCACGCAAACTGTCTCTGACAAGAGCAATATTTTACATAATTATGCAGTGCCTGGGAGCTATATGTGGGGCAGGTGTAGTTAAGGGCTTTCAGCCAAACGTGTACGAGAGAGTTGGTGGTGGTGCCAATTCAGTCGGTGCAGGGTATACCAGAAAGGCTGGCCTCGGAGCAGAGATTATTGGTACATTTGTGCTTGTTTACACTGTTTTCTCTGCCACTGATGCAAAGAGAAATGCTAGAGACTCCCATGTTCCAATATTGGCACCATTGCCTATTGGGTTTGCTGTCTTTTTGGTGCACTTGGCTACAATTCCTGTTACAGGGACTGGTATCAACCCTGCTAGAAGTCTTGGTGCAGCCATTGTATACAACAACGACTCAATTTGGGATGAACATTGGATTTTTTGGGTTGGGCCTTTCATTGGAGCAGCACTTGCAGCTTTGTACCATCAGGTAGTGATCAGGGCCATCCCCTTCTCGTCCAAGTGA 864 0.4803 MEGKEEDVRVGANRYGERQPIGTSAQVQDTKDYREPPSAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSDSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQPNVYERVGGGANSVGAGYTRKAGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAAIVYNNDSIWDEHWIFWVGPFIGAALAALYHQVVIRAIPFSSK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium558g00005 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Vium558g00005 287 NCBIfam MIP family channel protein 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00005 287 FunFam Probable aquaporin PIP1-2 39 287 - -
Vium558g00005 287 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00005 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00005 287 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00005 287 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00005 287 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00005 287 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00005 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 283 IPR034294 -
Vium558g00005 287 CDD MIP 54 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00005 287 Gene3D Glycerol uptake facilitator protein. 39 284 IPR023271 -
Vium558g00005 287 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00005 287 SUPERFAMILY Aquaporin-like 47 280 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium558g00005 Vium-Chr558 66707 74166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium558g00005 1 287 Major Intrinsic Protein MIP AT3G61430 85.017 3.79e-175 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium558g00005 K09872 - gmx:100803259 531.561