Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium558g00003 ATGCAGTGCCTGGGAGCTATATGTGGGGCAGGTGTAGTTAAGGGCTTTCAGCCAAACGTGTACGAGAGAGTTGGTGGTGGTGCCAATTCAGTCGGTGCAGGGTATACCAGAAAGGCTGGCCTCGGAGCAGAGATTATTGGTACATTTGTGCTTGTTTACACTGTTTTCTCTGCCACTGATGCAAAGAGAAATGCTAGAGACTCCCATGTTCCAATATTGGCACCATTGCCTATTGGGTTTGCTGTCTTTTTGGTGCACTTGGCTACAATTCCTGTTACAGGGACTGGTATCAACCCTGCTAGAAGTCTTGGTGCAGCCATTGTATACAACAACGACTCAATTTGGGATGAACATTGGATTTTTTGGGTTGGGCCTTTCATTGGAGCAGCACTTGCAGCTTTGTACCATCAGGTAGTGATCAGGGCCATCCCCTTCTCGTCCAAGTGA 447 0.4787 MQCLGAICGAGVVKGFQPNVYERVGGGANSVGAGYTRKAGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAAIVYNNDSIWDEHWIFWVGPFIGAALAALYHQVVIRAIPFSSK 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium558g00003 148 Gene3D Glycerol uptake facilitator protein. 1 145 IPR023271 -
Vium558g00003 148 PRINTS Major intrinsic protein family signature 119 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00003 148 PRINTS Major intrinsic protein family signature 43 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00003 148 PRINTS Major intrinsic protein family signature 79 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00003 148 FunFam Putative aquaporin PIP-type 7a 13 144 - -
Vium558g00003 148 Pfam Major intrinsic protein 1 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium558g00003 148 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 144 IPR034294 -
Vium558g00003 148 SUPERFAMILY Aquaporin-like 2 140 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium558g00003 Vium-Chr558 58370 59467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium558g00003 1 148 Major Intrinsic Protein MIP AT1G01620 86.486 2.31e-93 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium558g00003 K09872 - gmx:100803259 278.1