Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium558g00001 ATGCCTTCCTCTTCCACCACCATAGTCTCTAGATGCCTCGTCCATCCCGACCATAAATCCAGCATGAAACCACTCAAACTCTCTGTTTCTGACCTTCCAATGTTGTCGTGTCACTACATCCAAAAGGGGGTCTTGCTCACTGCCCCAACCTCTTCCGAAGACCTCATTCTCTCTCTCAAACACTCTCTCTCCGCCGCTCTCTCCCACTTCCCTGCCCTCGCCGGCCGTCTCTCCACTGACTGCCAGGGTTACGTTCATATCGACTGCAACGAAGCTGGCGTCGACTTCATCCATGCCAAGGCCAAGCACTTAACTCTAAACGCCGTCGTTTCGCCCACCCTCGTTGATGTTCACCCTTGCTTCAAGGAGTTTTTCGCCTATGAAATGATGATCTCCTACGCCGGCCACCACAATCCCCTCGCTGCCATCCAGGTCACCGAGCTCGCCGACGCCGTCTTCGTTGGCTGCACCGTCAACCACGCTGTCACTGACGGCACCTCCTTCTGGCATTTCTTCAACACCTTCGCCGCCATCAACAAAGGCGGCGCCACCAAGAAAGTACTCCGCGCGCCGGACTTCACGCGCGAAACCGTAATCAATTCCGACGCTGTCCTCTTAGTGCCCGCCGGCGGCCCAGCCCTCACCTTTGACGCCAAGGCACCCATCCGCGAACGCGTCTTCCATTTCTCCAGAGAATCCATTCAGAAACTCAAACTTAGAGCCAACGCCAAATCCAACGAATTAACGGAAGTAATGGAAAAACAAGTGAATGACGGTTGGAAAATCGTTAACGGTAAGGTTATCGGAAAGGACGAGATCTCGTCGTTTCAGTCGTTATCTGCTCAGCTCTGGCGTGCGGTGACACGTGCGAGGAAATTCAACGACCCTGCCAAAACGTCGACGTTTCGGATGGCGGTTAATTTCCGCCATCGCTTGGAGCCGAAGATGGACCCGTTTTACTTCGGTAATGCGATTCAGAGCATTCCAACCGTCGCAACCGTCAGGGATATCGTGTCACAGGATCTGCGTTTCTGCGCGGAGTTGCTGCACCGAAACGTTATCGCCCACGATGACGAAACGGTGCGACGTGGCATAGAGGAATGGGAGAACGCGCCGAGGCTGTTTCCTCTCGGGAACTTCGACGGCGCGATGATCACCATGGGAAGCTCTCCGCGTTTTCCCATGTACGACAACGACTTCGGCTGGGGAAGACCTGTCGCGATTCGGAGTGGCAAAGCGAACAAATTCGACGGCAAAATCTCCGCGTTTCCAGGGAGAGAAGGAAACGGCAGCGTGGATCTGGAAGTCGTTTTGGCTCCGGAGACCATGGCGGGGCTAGAAAACGACATGGAGTTTATGCAATACGTAACGCAGGTGGTGTGA 1383 0.5466 MPSSSTTIVSRCLVHPDHKSSMKPLKLSVSDLPMLSCHYIQKGVLLTAPTSSEDLILSLKHSLSAALSHFPALAGRLSTDCQGYVHIDCNEAGVDFIHAKAKHLTLNAVVSPTLVDVHPCFKEFFAYEMMISYAGHHNPLAAIQVTELADAVFVGCTVNHAVTDGTSFWHFFNTFAAINKGGATKKVLRAPDFTRETVINSDAVLLVPAGGPALTFDAKAPIRERVFHFSRESIQKLKLRANAKSNELTEVMEKQVNDGWKIVNGKVIGKDEISSFQSLSAQLWRAVTRARKFNDPAKTSTFRMAVNFRHRLEPKMDPFYFGNAIQSIPTVATVRDIVSQDLRFCAELLHRNVIAHDDETVRRGIEEWENAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPVAIRSGKANKFDGKISAFPGREGNGSVDLEVVLAPETMAGLENDMEFMQYVTQVV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium558g00001 460 Gene3D - 221 453 IPR023213 -
Vium558g00001 460 Pfam Transferase family 7 453 - -
Vium558g00001 460 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 454 - -
Vium558g00001 460 Gene3D - 6 205 IPR023213 -
Vium558g00001 460 Coils Coil 234 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium558g00001 Vium-Chr558 10005 11916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium558g00001 59 447 Monolignol Biosynthesis Gene Families AT5G48930 26.521 4.86e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium558g00001 - - var:108346317 887.1