Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5578g00002 ATGGAACCGTGGGGTGCTCATCATCGAGTCATGTTCATTAGTCAGCACGAGGAGGATGGAACTCCTTCTGATACTTCTAAGGGAGAGGAATCAAATGATGAAGAAGAAAAAATCGTCAAAGTTGAACCTGCCTTTGTGCCAGAAATTAAGAAAAGGAAACGCCTTAGCCTTAGTCAGCTTAAAGAAGTGAAAGGAGAATCATGTGGGAAGCAAAGCAGTAGCAAGCTTAAAAAGAAGAAGAATGAAAGTAGAGATAGATGGTCAGCTGAGAGGTATCAGTTGGCTGAGCAAAACATGTGGGAAGTATTAAAGTCTGAAGGGGCGACATTTGAAAACCCAATAACCCGACCTGCACTAAGATTAGCTGCTCGCAAACACATTGGTGATACTGGACTTTTAGACCACTTACTGAAGCACATTGACGGTAAAGTGGCGCCTGGAGGTACTGAGCGATTCCGAAGATGGTTCAACACCAATGGAATCATGGAGTATTGGTTAGAGAGTGCTGACTTGGACAAGGTGCGCCAGGAGGCTGGTGTACAGGACCCTTACTGGATACCACCATCTACATATAGGGCAGGCGGTGCACCCTCTCAGAAAATTGATTCTTCTGTTGAATTGAAACAGCTTAAAATAGAATTGGCGCAAATGAAGAAAGATATGCATGAGCTCATTTCCATGAAGGAAGAAAAAAGTGATATTAATACGATGGAGACCTACAAAGATTTTGTTAAGTGGAAAGCTATGACTGACCATCGCCTTACTGAAATCATTAATTCTTTGAAGGGTTTGCAGGGGAAATATGGTGAATTGATGATTTGGAAAACTAAAGTTGAGCAACAACTTGCAGAAATAACTAATAAATTGAATGATCTTCAAGCATCTAGGGAGTGCACCACTTTTAGTCCTCCTTCGGAAAGGTGGAAAGATTGGATAGAGAGCACTAACCTAGACAATATTCAGGAAGATGCATTTGCAACTTGGATTGGGAATCCAGAACTACTTAATGTCCCACCAGAGGTTATACCTGAAGATCTCAACACAGCCATACCAACACAGCCACCCAATGAGGAACTGACCAAGAAGAGCGATATGCTGGAACTGGAACCTGTTAGACTAGAAGATCAACCCAATGTGACCCCCGATTCTTCTACAACTGTTAATTCGAAGTCAGACCTTGACAACTCATTGATTATGTTTCAGGAAATGCTTATGGATTTATACAAATGGAAAGAAAAAATGGAACAGCAGCTGATGGAGGTGTCAAATACTGTATATGGTATGCTGGCAATGAAGTAG 1299 0.418 MEPWGAHHRVMFISQHEEDGTPSDTSKGEESNDEEEKIVKVEPAFVPEIKKRKRLSLSQLKEVKGESCGKQSSSKLKKKKNESRDRWSAERYQLAEQNMWEVLKSEGATFENPITRPALRLAARKHIGDTGLLDHLLKHIDGKVAPGGTERFRRWFNTNGIMEYWLESADLDKVRQEAGVQDPYWIPPSTYRAGGAPSQKIDSSVELKQLKIELAQMKKDMHELISMKEEKSDINTMETYKDFVKWKAMTDHRLTEIINSLKGLQGKYGELMIWKTKVEQQLAEITNKLNDLQASRECTTFSPPSERWKDWIESTNLDNIQEDAFATWIGNPELLNVPPEVIPEDLNTAIPTQPPNEELTKKSDMLELEPVRLEDQPNVTPDSSTTVNSKSDLDNSLIMFQEMLMDLYKWKEKMEQQLMEVSNTVYGMLAMK 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5578g00002 432 MobiDBLite consensus disorder prediction 11 43 - -
Vium5578g00002 432 MobiDBLite consensus disorder prediction 1 43 - -
Vium5578g00002 432 MobiDBLite consensus disorder prediction 60 88 - -
Vium5578g00002 432 Coils Coil 200 227 - -
Vium5578g00002 432 PANTHER PROTEIN DYAD 2 430 IPR044221 GO:0007131|GO:0051177|GO:0051321
Vium5578g00002 432 Coils Coil 275 295 - -
Vium5578g00002 432 MobiDBLite consensus disorder prediction 71 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5578g00002 Vium-Chr5578 5392 9049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5578g00002 86 167 PHD Transcription Factor Family AT5G22260 40.964 2.81e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5578g00002 - - gmx:100806484 760.37