Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5573g00002 ATGGGTGAGGAATATGGCATTATATCGAAGGAGACAGTAAAGCCATCTTCCCAAACCCCTATTCAGCACTTCAAACTCTCTTTTCTCGACCAATTGGCTCCTTCATTCCATGTTCCCATTCTGCTCTTTTACTCTGCCTCTGATGTTAGAACCTTTGCTGCCACTGACCACAGTGCACTGTCACAAAAGTTGAAAACTTCTCTGTCACAAGTCCTCACTCTCTATTACCCATTTTGCGGAAGACTCAGAAACTCTTCAATCATTGAGTGCAACGACGAGGGTGTTCTTTTCATCCACTCTAAACTCCCCATTGAGCTCTCAAACATTCTCCAAAACCCTCAACTTCACACCCTCTATGAACTTCTCCCATGTCCTCCTTACAACCTTGAACCACAACAAAGGGACACGTTCGGGATCATGGCAGTTCAGTTGAGCCAATTCAAGTGTGGGGGCATAGCCCTTGGCGTGTGCTTCTCACACAAGATCGCTGATGCTTCCACTGCAGCATCGTTTCTCAACGCTTGGGCTGCAACATCACGTGGACACGGCAATAGCAACCTCGTTCCACCTCCAATGGAAGAGGCAAGTCTGCTTTTCCCATCGAGGAACATATCCGTTGACATGACAAGTGGCATGGTTGGCCAAGAAAAGACTGTGACAAAGAGATTCATATTTAGTGGCAGCAGTATTTCTAGATTGAGACAAACCATAGGGTGCCCCAGATTCAATCCCTCACGCGTTGAAGCCGTGACGACGCTGCTATGGAAATCATCACTGGAAGCAGCAAAAGAAAGTTTAGATTCTGGGGAAGAAAAAATTGTTGCTTCTGCGGTATCCCACACAGTGAACATTCGCAGCAGAATGGTTCCATCTTTGTCGAAGCATTCAGTTGGAAACATTTGGCAATACGCGGTGTCTTCGTTGGTGGAAGTGGAGGGGGAAGTGGGGTTGCGTGATTTGGCAGAGAGAAAGAAGGAAACAATAGGAAAAGTTGATGGAGATTATATAAAGAAACTTCAGAGTGATGAGTTTGTTGAAGTAGTTCAGGCTATAGAAGAAGCAAGGAGACTGGCTGAAGAAAAGGGTGTTCGAGGTTATGGGTTTACCAGTTGGGTAGGGTTTGAGTTCTATGAAGTTGATTTTGGATGGGGAAAGCCCAGTTATGCTAGCACCATTCCTGTGCCCATAAAAAATTTGGGAACTTTGATGAGCACAAAGGATGGAGATGGCATAGAGGCATGGCTTACCTTGACCACACGTGACATGGCTCGGCTTGAACACAATGCAGAACTTCTGAACTTTGCGTCGTTTGATTCAACTCACTGCCATGGGATCATTAGAGTGTGCTTCATGTTTCTAGTCTCTAGTATAGCTTATTGGAATAATGGGAATCAGCATGGTTTCTTTACTAGAATGATCTTCATCATCCTNTATGGGTTTACCAGTTGGGTAGGGTTTGAGTTCTATGAAGTTGATTTTGGATGGGGAAAGCCCAGTTATGCTAGCACCATTCCTGTGCCCATAAAAAATTTGGGAACTTTGATGAGCACAAAGGATGGAGATGGCATAGAGGCATGGCTTACCTTGACCACACGTGACATGGCTCGGCTTGAACACAATGCAGAACTTCTGAACTTTGCGTCGTTTGATTCTTAA 1656 0.4511 MGEEYGIISKETVKPSSQTPIQHFKLSFLDQLAPSFHVPILLFYSASDVRTFAATDHSALSQKLKTSLSQVLTLYYPFCGRLRNSSIIECNDEGVLFIHSKLPIELSNILQNPQLHTLYELLPCPPYNLEPQQRDTFGIMAVQLSQFKCGGIALGVCFSHKIADASTAASFLNAWAATSRGHGNSNLVPPPMEEASLLFPSRNISVDMTSGMVGQEKTVTKRFIFSGSSISRLRQTIGCPRFNPSRVEAVTTLLWKSSLEAAKESLDSGEEKIVASAVSHTVNIRSRMVPSLSKHSVGNIWQYAVSSLVEVEGEVGLRDLAERKKETIGKVDGDYIKKLQSDEFVEVVQAIEEARRLAEEKGVRGYGFTSWVGFEFYEVDFGWGKPSYASTIPVPIKNLGTLMSTKDGDGIEAWLTLTTRDMARLEHNAELLNFASFDSTHCHGIIRVCFMFLVSSIAYWNNGNQHGFFTRMIFIILYGFTSWVGFEFYEVDFGWGKPSYASTIPVPIKNLGTLMSTKDGDGIEAWLTLTTRDMARLEHNAELLNFASFDS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5573g00002 551 Gene3D - 442 547 IPR023213 -
Vium5573g00002 551 Gene3D - 215 440 IPR023213 -
Vium5573g00002 551 Gene3D - 5 207 IPR023213 -
Vium5573g00002 551 Pfam Transferase family 478 543 - -
Vium5573g00002 551 Pfam Transferase family 7 431 - -
Vium5573g00002 551 PANTHER F21J9.9 468 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5573g00002 Vium-Chr5573 25271 31083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5573g00002 13 426 Monolignol Biosynthesis Gene Families AT5G48930 24.099 1.14e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5573g00002 - K13065 gmx:100792323 538.11