Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5571g00003 ATGTGTGGAGGTGCGATTATCTCCGACTTCATTCCGGCGGGGCCCGCCGGCCGGTCCCGACGCGTGACCCCCGAAATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGCCGCTGCTGGACGATGATTTCGAGGCGGGGTTCAGGGAATTCAAGGATGACTCTGAAATCGAGGATGATGATGATGAGGATGAAGAGGACAGTTTGATGGTGGTTGGTGTGAAGAAGTCCGTTGGCTTTTCTCGCCCCAACAAGACCTCTAAGTCTCTCTCTCGTGGATCAACAACTGTAAAATCTGGGGAATCAAAAGGGCAAATTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAATATAGAGGAATTCGTCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAGGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGCTGTTTCTTCAAAACGCCTCAAGGTGATTCCAGAGGAAAGCCTGAGCTCTGTGCAGCCAAAAATGAACCACTTGTTCAACTTTGGTGACAATCTGGAGGACTACTACAGCCCTGTGGATCAGGTGGAACAGAAGCCATTGGTTAACCAGTATGTGAACCCTGGTCCATTCACTGGAAACTGTGTTCAGCTCTCACCAGTTACTCAATCTGCTGATGTTACTGCTTATTTCAGTTCTGAGCATTCGAGCAATTCATTTGATTACTCTGATCTTGGATGGGGTGAACAAGTTCCAAGGACCCCTGAAATCTCCTCCATTCTTTCTGCTCCTCTGGAGGGTGAATCTCAGATTCAGAAGAAAGACAGTGAAGACATGATGCCTGTGCAAGATGATTCTGCAAAGACACTTTCTGAGGAGCTTGCAGACATAGAATCCCAGCTGAAGTTCTTCGAGGCCCCTTTGTTTGATGGAAGCTGGGGTGATGCTTCATTGGCTTCTCTGCTAGGCAGTGATGCAACTCAGGATGCTGGAAACCCTTTGAACCTTTGGAGCTTCGACGACCTGCCATCAATGGCAGGCGTTTTCTGA 1122 0.4947 MCGGAIISDFIPAGPAGRSRRVTPEILWPNLRKRFSKPLLDDDFEAGFREFKDDSEIEDDDDEDEEDSLMVVGVKKSVGFSRPNKTSKSLSRGSTTVKSGESKGQIEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSAVSSKRLKVIPEESLSSVQPKMNHLFNFGDNLEDYYSPVDQVEQKPLVNQYVNPGPFTGNCVQLSPVTQSADVTAYFSSEHSSNSFDYSDLGWGEQVPRTPEISSILSAPLEGESQIQKKDSEDMMPVQDDSAKTLSEELADIESQLKFFEAPLFDGSWGDASLASLLGSDATQDAGNPLNLWSFDDLPSMAGVF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5571g00003 373 PANTHER DNA-BINDING DOMAIN 91 287 IPR044808 GO:0003700|GO:0009873
Vium5571g00003 373 MobiDBLite consensus disorder prediction 81 102 - -
Vium5571g00003 373 FunFam Ethylene-responsive transcription factor 2 116 175 - -
Vium5571g00003 373 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Vium5571g00003 373 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Vium5571g00003 373 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Vium5571g00003 373 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Vium5571g00003 373 SUPERFAMILY DNA-binding domain 117 175 IPR016177 GO:0003677
Vium5571g00003 373 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Vium5571g00003 373 MobiDBLite consensus disorder prediction 81 104 - -
Vium5571g00003 373 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Vium5571g00003 373 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5571g00003 Vium-Chr5571 17063 20022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5571g00003 1 369 AP2-EREBP Transcription Factor Family AT3G14230 43.142 2.11e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium5571g00003 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5571g00003 K09286 - gmx:547957 555.444