Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5571g00002 ATGTGTGGAGGTGCGATTATCTCCGACTTCATTCCGGCGGGGCCCGCCGGCCGGTCCCGACGCGTGACCCCCGAAATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGCCGCTGCTGGACGATGATTTCGAGGCGGGGTTCAGGGAATTCAAGGATGACTCTGAAATCGAGGATGATGATGATGAGGATGAAGAGGACAGTTTGATGGTGGTTGGTGTGAAGAAGTCCGTTGGCTTTTCTCGCCCCAACAAGACCTCTAAGTCTCTCTCTCGTGGATCAACAACTGTAAAATCTGGGGAATCAAAAGGGCAAATTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAATATAGAGGAATTCGTCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAGGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGCTGTTTCTTCAAAACGCCTCAAGGTGATTCCAGAGGAAAGCCTGAGCTCTGTGCAGCCAAAAATGAACCACTTGTTCAACTTTGGTGACAATCTGGAGGACTACTACAGCCCTGTGGATCAGGTGGAACAGAAGCCATTGGTTAACCATTCTGAGCATTCGAGCAATTCATTTGATTACTCTGATCTTGGATGGGGTGAACAAGTTCCAAGGACCCCTGAAATCTCCTCCATTCTTTCTGCTCCTCTGGAGGGTGAATCTCAGATTCAGAAGAAAGACAGTGAAGACATGATGCCTGTGCAAGATGATTCTGCAAAGACACTTTCTGAGGAGCTTGCAGACATAGAATCCCAGCTGAAGTTCTTCGAGGCCCCTTTGTTTGATGGAAGCTGGGGTGATGCTTCATTGGCTTCTCTGCTAGGCAGTGATGCAACTCAGGATGCTGGAAACCCTTTGAACCTTTGGAGCTTCGACGACCTGCCATCAATGGCAGGCGTTTTCTGA 1038 0.499 MCGGAIISDFIPAGPAGRSRRVTPEILWPNLRKRFSKPLLDDDFEAGFREFKDDSEIEDDDDEDEEDSLMVVGVKKSVGFSRPNKTSKSLSRGSTTVKSGESKGQIEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSAVSSKRLKVIPEESLSSVQPKMNHLFNFGDNLEDYYSPVDQVEQKPLVNHSEHSSNSFDYSDLGWGEQVPRTPEISSILSAPLEGESQIQKKDSEDMMPVQDDSAKTLSEELADIESQLKFFEAPLFDGSWGDASLASLLGSDATQDAGNPLNLWSFDDLPSMAGVF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5571g00002 345 MobiDBLite consensus disorder prediction 81 102 - -
Vium5571g00002 345 FunFam Ethylene-responsive transcription factor 2 116 175 - -
Vium5571g00002 345 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Vium5571g00002 345 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Vium5571g00002 345 PANTHER DNA-BINDING DOMAIN 89 262 IPR044808 GO:0003700|GO:0009873
Vium5571g00002 345 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Vium5571g00002 345 MobiDBLite consensus disorder prediction 256 276 - -
Vium5571g00002 345 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Vium5571g00002 345 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Vium5571g00002 345 MobiDBLite consensus disorder prediction 81 104 - -
Vium5571g00002 345 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Vium5571g00002 345 SUPERFAMILY DNA-binding domain 117 175 IPR016177 GO:0003677
Vium5571g00002 345 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5571g00002 Vium-Chr5571 17063 20022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5571g00002 1 341 AP2-EREBP Transcription Factor Family AT3G14230 43.112 6.56e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium5571g00002 AP2 4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5571g00002 K09286 - gmx:100818646 494.967