Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5570g00001 ATGTCGAGCACAGCTGGTCAGGTCATCAAATGCAAAGCCGCGGTAGCATGGGAGGCAGGGAAGCCACTGGTGATTGAGGAAGTAGAGGTGGCACCACCAGAGGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAGACTCCATTGTTTCCTCGCATATTTGGTCATGAGGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTGAAACCAGGGGACCATGCTCTTCCTGTGTTTACAGGGGAGTGTGGGGAATGTGCGCATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTGCTGAGGATCAACACTGATCGTGGTGTCATGATCCATGATAGTCAAACAAGATTTTCTATAAAGGGACAACCTATTTACCATTTTGTCGGTACTTCTACATTCAGTGAATACACTGTGGTTCATGCTGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATTTGTGTTCTCAGTTGTGGAATATGCACAGGTCTTGGGGCTACTGTCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCCGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCAAGCCGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAACCCGTACAACAGGTAATTGCTGAAATGACAAATGGGGGAGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAGGCCATGGTGTCAGCATTCGAATGTGTTCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTTTTGAACGAGAGGACTCTTAAGGGTACCTTTTATGGTAACTACAAACCTCGCACTGATCTTCCTTCAGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACCGTTCCATTTTCAGAAATTAACAAAGCTTTTGATTACATGCTGAAAGGGGAGTCTATCAGATGCATTATCCGTATGGGAGAGTAG 1143 0.4619 MSSTAGQVIKCKAAVAWEAGKPLVIEEVEVAPPEAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECAHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKICVLSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRAVECTGSIQAMVSAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5570g00001 380 CDD alcohol_DH_plants 9 377 - -
Vium5570g00001 380 Gene3D - 19 370 - -
Vium5570g00001 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Vium5570g00001 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Vium5570g00001 380 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Vium5570g00001 380 Gene3D - 183 321 - -
Vium5570g00001 380 SUPERFAMILY GroES-like 4 187 IPR011032 -
Vium5570g00001 380 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
Vium5570g00001 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Vium5570g00001 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Vium5570g00001 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vium5570g00001 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5570g00001 Vium-Chr5570 11391 14253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5570g00001 1 370 Monolignol Biosynthesis Gene Families AT1G72680 24.533 3.38e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5570g00001 K18857 - gmx:100783858 749.969