Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium556g00004 ATGGAATCAGAGGATCTGGTGAAACAGGAATTGGAGGAATTGCTGAAACAATTGGGGAAGAAGCAAAGGTTTGAAGCCTCTGTTTTGGCCCTCAAATCCCTTCTCCAAAGCTCATATCCTTCAGCTTCTCCATCGCTTCGCCAATCCTTTTATTCAGTTATTTGCCGAGTTGCTACTGTGTTGAAGACCAGATATACAGCACCAGGTTTCTGGAATGCTGGACTGGGACTTTTTGAGCTGGCATATTTGCTTGTTTCTGAACCTTCTGAGAAGGAACACTTGAAGGCTTGCATTGCTCAGGCCAGGGAACATTTGCATCTGGAAGACAATCCATCACTGCAAGCTTCACAACTTGCAGATAATCAAGCACACAGAGGATACCTTTTTGAGGGGCACCTTACGGTTGATCCTGAACCCCCACAACCTCAATGGTTGGTGCAGTCAAACCTCTTGACAACAGCTGCTACACTCTTTGCTGCCGAATCTTCCCAAGCTTCAGCAGAAAATGGAACCACCCAAGAGGATGCAGCCAATATTCTTCAAGATCTTATAAATAGATTGGAAGAAGTTGTGCCCTTGATGGTGGATGAAGGTACTGTAGCTCCGAGAGCCCCTCCAGCCAGTAAAGAGGTTGTGGCAAAACTTCCAGTCATCACTCTCACAGAGGAAATCCTGGCTACTTTGGGGAAAGATGCAGAGTGTGCCATTTGCAGGGAGAATTTAATTTTAAATGACAAAATGCAAGAGCTGCCATGCAAACACACATTCCACCCACCATGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCCATCTGTCGGTATGAGCTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAGCGAGAAAAGGAAGCTGAAGAGGAGAGAAAAGGTGCTGAAAATGCAATTCGAGGTGGTGAATATATGTATGTTTAA 945 0.455 MESEDLVKQELEELLKQLGKKQRFEASVLALKSLLQSSYPSASPSLRQSFYSVICRVATVLKTRYTAPGFWNAGLGLFELAYLLVSEPSEKEHLKACIAQAREHLHLEDNPSLQASQLADNQAHRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFAAESSQASAENGTTQEDAANILQDLINRLEEVVPLMVDEGTVAPRAPPASKEVVAKLPVITLTEEILATLGKDAECAICRENLILNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium556g00004 314 SMART ring_2 234 274 IPR001841 -
Vium556g00004 314 Pfam Ring finger domain 233 275 IPR001841 -
Vium556g00004 314 Coils Coil 1 21 - -
Vium556g00004 314 CDD RING-H2_RNF126-like 233 275 - -
Vium556g00004 314 SUPERFAMILY RING/U-box 228 281 - -
Vium556g00004 314 Coils Coil 285 305 - -
Vium556g00004 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Vium556g00004 314 FunFam E3 ubiquitin-protein ligase RNF181 195 281 - -
Vium556g00004 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 281 IPR013083 -
Vium556g00004 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 134 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium556g00004 Vium-Chr556 79369 82653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium556g00004 7 314 C3H Transcription Factor Family AT5G20910 65.260 1.97e-135 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium556g00004 K16274 - gmx:100798732 525.013