Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium556g00001 ATGGTTTGTGAGATGGAAAGTGATTGTATTGAAGACATGGACGTTGAAGTCCTCTCTTCAATGTGGCCAGAGGATATTGGCTCTGATGTTGGAAAACAGTTCAATATAGAGAAGCCTGGAAGGGACCAAGATATGTTGGAGGAAGTAACAATCTTAGAGGAGCCAACTATAGCGGATTTTCAGCGTCTCATGGAGCTTACAAATTACACAGATAAAGGGTCTTCTCAGTTGGCATATCTCATGCAACACTGGGAGTATAAGCAGGCTAATGCAGTTCGGCTTCTCAGAGAGGAACTTGACAACCTTAGTAAACAAAGGAAGGAAGTTGAGCTCAGGAAATTGGAGATATTGAAAGACAATCGGTTTGAGGAAGAGAATTATGGAGGTGACAAACGACCAGTTTCTATATTGGATGAGATTTACTATACATGGCAAGATGTGCCAGTGCCACTCAGGAAAAGTGACGTGGTTGTGAAAAACAAGAGGATTGAGATTGATGCTGAGTATGACACTGTTGTGTATTGGAAACAGAGGGCACAGCAGTTGGAAAGACAGTTGGAGGCAAGTGTCAACAGAGAGCAGATACTAACTGACAAGTTGCAAGAAAGTATAAAGAATTTCGAAAGGCAATCTTCACCAGTGGAAGAACTAACTCAGATTCTGAAGAGGGCAGATAATTTCTTACATTTCATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGATATCGCTTTATCTACAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGGAAAACAGATGTTGAAATTTTCACTGGATCCGGTGTTAAGGAGTCTCAGGATTTCAAGAGGGAAGTGATGGAGAAAGGGTTGCCTGCAAAGAAGGAAATTACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTCTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAAAGTGGCAAAGCTTAGGGAGGATATTGCAGTCCAGAAAGCCAAAGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTATCTGGAGTTGTTAGCATGGCTGAAATTCTTTCCACCACGAAACTTGATCGGGAACAAAGACAGCTTTTGAATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTGGTAAAACATGTTCTCCAGACTGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGAAATGTGGCAGATGATATACCTATTGAGGTCATTGGAGATGTTTTGAGGATTCGGCAGATCCTCACAAATTTAGTCAGCAATGCCGTAAAGTTTACACATGAAGGCAAAGTTGGTATCAATCTTTACGTTGTTTCAGAGCCACCTTTTACCAAAGCAGAAGGCCATCAAAAGATGACCATAGATCAGTCTACAAATTCAGCAAATGGAGTGAAGGAAGAGAAACGTGCATCAACACCAAGAAGCAGCAGTGATAAAAATTGTCATGATGGTCAAAAACAGAACGACCATCCTAGCCAAAATCATTTATTCAACGACGAATGTAGATCTTCAGTTAAAAGTGAATGCTCAATGAATGGAGATACTGAGGAGCAAACTCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTGTATGACACAGGAATTGGAATACCAGAAAAGGCAATACCTAATTTATTTAGAAGGTACATGCAAGTAAGTGCAGACCATGCTCGAAAATATGGTGGCACAGGTCTGGGGCTGGCAATATGCAAACAACTGGTTGAGTTAATGGGGGGTCGTTTAACAGTGTCTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTTCCCTACAAAGTTTCAACGGCTTGTGATAATTCTGATGATCCAGATGAACTATCAGATGTGGATGATAATGAGGATGATACCACAGAGGGGTTCTTCCAATTCCAACCACGCACTCTAGGCTCTCTCTTCTCTTCTAATGGACCTACCAGGCCCCAAAATCTACTTCCAGGTTTCAGAAGCTCAAACAAGTTCAATGGATTTTCAGAGAATTCTTACTCATTCCCCACTACAGACATAAAATCAAAAGGGACTAGTACAACTGAGGATGCATCTTCAGTTGTTGTTGATGCTCCAGAGATCTCTGAGTCAACAAGTTCATCAAATCATAGCCCTGAAACAAAGAACGAAAGTGCAGTTAACACAAACCAACAGAATCAAGATAAGGCACATGCTCGGTTACAAAATGGTAATGTAGACTCTTCTCAACATAAGGAGGAAATCGCACTAGGAACAACGTCAAATGAACCCCAACAAACATGTCATCAAGTGAAGACAGACACAGCCTCCCAATGTGTCGTTAGTAGTAATAATAACACTTCATCAGAAGTGATCAAATCCTCATCAGGGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGAGGTTAGGCTATAGCATGGATGTTGTGAACAATGGAGTGGAAGCTGTACGTGCAGTTCAACGGCATACGTATGATGTCATTCTGATGGATGTGTTCATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTCGGTCTTATGAGGAAACTGGCAATTGGGATGCTGCAAGAAAAGCTGGAATTGAACAATGCTCACCAATTTCACAAGAATGTTCTGTACCACCTAAAAACCGGATCCACATCGTTGCGATGACAGCAAACACAATGTCAGAGAGTGCCGAGGAGTGTTATGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTTACATTCCAAAAATTGAAAGACTGTCTAGAACAGTACCTGAGGTGA 3036 0.4058 MVCEMESDCIEDMDVEVLSSMWPEDIGSDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDNRFEEENYGGDKRPVSILDEIYYTWQDVPVPLRKSDVVVKNKRIEIDAEYDTVVYWKQRAQQLERQLEASVNREQILTDKLQESIKNFERQSSPVEELTQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKREKVAKLREDIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEVIGDVLRIRQILTNLVSNAVKFTHEGKVGINLYVVSEPPFTKAEGHQKMTIDQSTNSANGVKEEKRASTPRSSSDKNCHDGQKQNDHPSQNHLFNDECRSSVKSECSMNGDTEEQTHSTETTVWIRCDVYDTGIGIPEKAIPNLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTACDNSDDPDELSDVDDNEDDTTEGFFQFQPRTLGSLFSSNGPTRPQNLLPGFRSSNKFNGFSENSYSFPTTDIKSKGTSTTEDASSVVVDAPEISESTSSSNHSPETKNESAVNTNQQNQDKAHARLQNGNVDSSQHKEEIALGTTSNEPQQTCHQVKTDTASQCVVSSNNNTSSEVIKSSSGPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVRAVQRHTYDVILMDVFMPVMNGLQTTKLIRSYEETGNWDAARKAGIEQCSPISQECSVPPKNRIHIVAMTANTMSESAEECYANGMDSFVSKPVTFQKLKDCLEQYLR 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium556g00001 1011 ProSiteProfiles Histidine kinase domain profile. 380 681 IPR005467 -
Vium556g00001 1011 Gene3D - 860 1011 - -
Vium556g00001 1011 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Vium556g00001 1011 Coils Coil 92 119 - -
Vium556g00001 1011 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 1010 - -
Vium556g00001 1011 MobiDBLite consensus disorder prediction 689 705 - -
Vium556g00001 1011 FunFam Histidine kinase 5 215 350 - -
Vium556g00001 1011 SUPERFAMILY CheY-like 865 1011 IPR011006 -
Vium556g00001 1011 MobiDBLite consensus disorder prediction 687 706 - -
Vium556g00001 1011 MobiDBLite consensus disorder prediction 719 738 - -
Vium556g00001 1011 FunFam Probable histidine kinase 1 570 684 - -
Vium556g00001 1011 MobiDBLite consensus disorder prediction 525 575 - -
Vium556g00001 1011 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Vium556g00001 1011 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Vium556g00001 1011 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Vium556g00001 1011 FunFam Histidine kinase 5 861 1011 - -
Vium556g00001 1011 Pfam Response regulator receiver domain 869 937 IPR001789 GO:0000160
Vium556g00001 1011 Pfam His Kinase A (phospho-acceptor) domain 375 438 IPR003661 GO:0000155|GO:0007165
Vium556g00001 1011 MobiDBLite consensus disorder prediction 545 574 - -
Vium556g00001 1011 Gene3D - 439 685 IPR036890 -
Vium556g00001 1011 MobiDBLite consensus disorder prediction 528 544 - -
Vium556g00001 1011 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 484 679 IPR003594 -
Vium556g00001 1011 CDD HATPase_EvgS-ArcB-TorS-like 489 678 - -
Vium556g00001 1011 FunFam Putative histidine kinase 5 361 438 - -
Vium556g00001 1011 CDD HisKA 372 434 IPR003661 GO:0000155|GO:0007165
Vium556g00001 1011 CDD REC_hyHK_CKI1_RcsC-like 869 1006 - -
Vium556g00001 1011 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 427 680 IPR036890 -
Vium556g00001 1011 SMART HKATPase_4 484 681 IPR003594 -
Vium556g00001 1011 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 438 IPR036097 GO:0000155|GO:0007165
Vium556g00001 1011 MobiDBLite consensus disorder prediction 746 821 - -
Vium556g00001 1011 ProSiteProfiles Response regulatory domain profile. 868 1010 IPR001789 GO:0000160
Vium556g00001 1011 Gene3D - 361 438 - -
Vium556g00001 1011 Gene3D PAS domain 214 350 - -
Vium556g00001 1011 SMART REC_2 867 1006 IPR001789 GO:0000160
Vium556g00001 1011 Coils Coil 179 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium556g00001 Vium-Chr556 32633 40327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium556g00001 1 1010 Histidine Kinase Gene Family AT5G10720 57.409 0.0 1093
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium556g00001 HATPase_c 2.2e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium556g00001 - - gmx:100796072 1818.51