Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5554g00004 ATGGTTGTGCTTGAACTGTTGACTTTGTNGCGTACTAGTGTTTTTGATCGTATCATCCAAACTATTGGCCATGCAATTGAGACCCAGGATAATAATGATGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTTCTCTTGTTACTCCAGCGCACACTCAAGGCTAGTGGTGCTGCTGGAATGGCTCCGCAACGCCGCCGTTCTTCATCTGCAACCTTGTTTGGGAGGATGACTCAAAGTTTCCGTGGAACTCCAGCTGGAGTAAACCTTTCCCTAGTCAATGGTAGCGCAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCTGCCCTGCTTTTCAAACAGCAGCTTACAGCATATGTGGAAAAGATATATGGAATGATTCGTGATAATTTGAAGAAAGAAATTTCTCCCTTGCTCGGATTATGCATCCAGGCACCAAGAACATCGAGAGCAAGCCTTGTTAAGGGATCATCACGTTCTGTTGCAAACACTGAAGCCCAGCGTGCCTTGATTGCTCACTGGCAGGGGATAGTGAAGAGCCTAGGAAACTTTCTAAACACTTTGAAAGCTAACCATGTTCCTCCCTTTTTAGTTCGTAAGGTGTTCACGCAAATTTTTTCTTTCATCAATGTACAATTGTTTAATAGTCTTCTTTTACGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTCAAAGCTGGTCTGGCTGAATTGGAGCATTGGTGTTATAAGGCAACAGATGAGTATGCAGGTTCTGCCTGGGATGAGCTCAAACATATTAGACAAGCTATTGGATTTCTGGTCATTCATCAGAAACCAAAGAAAACATTGGATGAAATAAGCCATGACCTGTGCCCAGTCCTTAGTATACAGCAACTATATCGTATAAGCACCATGTACTGGGATGACAAATATGGAACGCATAGTGTGTCTTCTGATGTCATATCCAACATGAGAGTATTGATGACTGAAGATTCAAATAATGCAGTTAGTAACTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACATATCGAAATCAATGGAACAGATAGATATTGCAGATATAGAGCCCCCGCCACTAATTCGTGAAAATTCAGGCTTTAGCTTTTTGTTGCCGCGCCCAGATTGA 1161 0.4229 MVVLELLTLXRTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPAGVNLSLVNGSASRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQIDIADIEPPPLIRENSGFSFLLPRPD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5554g00004 386 ProSiteProfiles Dilute domain profile. 16 329 IPR002710 -
Vium5554g00004 386 PANTHER DILUTE DOMAIN-CONTAINING PROTEIN YPR089W 12 380 - -
Vium5554g00004 386 SMART DIL_2 204 311 IPR002710 -
Vium5554g00004 386 Pfam DIL domain 205 308 IPR002710 -
Vium5554g00004 386 CDD MyosinXI_CBD 11 352 IPR037975 GO:0007015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5554g00004 Vium-Chr5554 25216 29005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5554g00004 9 386 Myosins gene family AT1G54560 91.534 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5554g00004 K10357 - vum:124841093 745.732