Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5552g00009 ATGTGGATAATGGATATTCCCGAGGTTGACGAAAATCATTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTCTCTTTCGGCAATACACTGCAAGATATTGTTATTATTCCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGCTCATTGCATGTAGCCTTAGAAAAGACAAAGAATGTTCTTCGACACTGCTCAGAGTCGAGTAAACTTTACTTGGCTATAACCGCAGATTCTGTTCTTCTAAAATTTGAAAAGGCTAAATGTGCTCTTGAGGATAGTCTTAATGGGGTGAAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGATGAAATTGTGAATGAACTTGCAAATACGGTATTTGCACTTGATCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTTCAAAAGGGAAGAAAGCTTAATGATTCTAATGACAGTAGTGAACTTGAATGCTTTCATCTAGCTGCTACTACTATTGGAATCACTTCTTCAAGAGCCGCTCTTGCAGAAAGAAGATCTCTTAGAAAACTCATAGAAAGAGCTCGAGCTGAGGATGACAAGCGGAAAGAATCAATTATTGCTTACCTTTTACACCTTATGAGGAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTACCGGTGGTCATTGTCATGTCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAACTTTAAGCCTAGTAATAGGGAATCAGGGCAGATGCTCGTTTTGCCTGAAGAGTTACGATGTCCAATATCTCTACAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGCATTGAGAAGTGGTTCAGAGATGGGCACAAGACCTGCCCAAAGACACAACAGAAACTTTCACATCTTTCTTTGACTCCTAATTACTGTGTGAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATAGAGTTCCTATTCCTGAAGGCCCTCCAGAATCTCTTGATTTTAACTACTGGAGATTGGCGTTATCAGATACTGAATCCACAAATTCAAGATCTGCAAACAGTGTTGGCTCTTGCAAGTTGAAAGGTATCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGGAAATGGGGGGGAATGCAGCTGAGGGCCTTTCTGCACAAGAGGAAGAAGATCATGAACGGTATCTTAGTTTTCTTAAAGTCTTGTCAGAAGGGAACAATTGGAAGAGGAAGTGCAAAGTTGTTGAACATTTGAGGCTGTTGCTGCGGGACGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGATGCACTTATTCAGTTTCTGCAATCAGCCGTGCATGAAGGGAATGTGATGGCTCTTGAAAATGGAGCCATGGCTCTATTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTGTCACTGTTGGAGGAAATGATATCAAAAACTAGTTCCCATGGTTGTGTAGCCGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGGACGTGATTGGCACGAGTCAGGCTGTCCAGTTCCTTATCCAGATTCTTCACGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAATATTTCTACATTGTCCTCCAACATTCCACATCTCCTTTCATCTGGCATCATTGAAAGCCTACGATCCATTCTTGTAGACCAGGGTGATTGCAGTTTGACAGAAAAATGCCTTGCTGTTTTGATAAATATGGCTGTCTCTCCAGCAGGAAGAGAGCAAATGATTTTGGCTCCTGCACTCATAAGTGCCTTGGCGTCCACGCTGGATACTGGTAAGCTCACAGAGCAGGAGCAAGCTGCATCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGCTGTGAGATGGTCTTGCAAGAAGGCGTTATCCCTGCGTTGGTGTCATTATCTGTAAATGGAACCTCGAGAGGAAGAGAAAAGGCTCAGAAACTTTTGACGGTCTTCCGAGAGCAGCGTCAACGAGACCATTCACCTGTTGAGACAAATCAATGTGAACCTGAAAGTAGTGATTTCTCTATACCTCCTCCTGAAACGAAACCGTTATGTAAATCAATATCCAGAAGAAAGGTGGTAGGGAAAGCTTTTAGATTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2310 0.4169 MWIMDIPEVDENHFAASDAKLHGEMCKSLSAIHCKILLLFPSLEAARPRSKSGIQALCSLHVALEKTKNVLRHCSESSKLYLAITADSVLLKFEKAKCALEDSLNGVKDIVPQSIGCQIDEIVNELANTVFALDPSEKQVGDDLIALLQKGRKLNDSNDSSELECFHLAATTIGITSSRAALAERRSLRKLIERARAEDDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGITGGHCHVFDRQLSKLSSFNFKPSNRESGQMLVLPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHKTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNRVPIPEGPPESLDFNYWRLALSDTESTNSRSANSVGSCKLKGIKVVPVEESGISEEMGGNAAEGLSAQEEEDHERYLSFLKVLSEGNNWKRKCKVVEHLRLLLRDDEEARIFMGANGFVDALIQFLQSAVHEGNVMALENGAMALFNLAVNNNRNKEIMISAGILSLLEEMISKTSSHGCVAALYLNLSCLEEAKDVIGTSQAVQFLIQILHAKTEVQCKIDSLHALYNISTLSSNIPHLLSSGIIESLRSILVDQGDCSLTEKCLAVLINMAVSPAGREQMILAPALISALASTLDTGKLTEQEQAASCLLILCNRSEECCEMVLQEGVIPALVSLSVNGTSRGREKAQKLLTVFREQRQRDHSPVETNQCEPESSDFSIPPPETKPLCKSISRRKVVGKAFRFLWKSKSYSVYQC 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5552g00009 769 Gene3D - 412 717 IPR011989 -
Vium5552g00009 769 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Vium5552g00009 769 Coils Coil 178 198 - -
Vium5552g00009 769 MobiDBLite consensus disorder prediction 712 732 - -
Vium5552g00009 769 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Vium5552g00009 769 SUPERFAMILY RING/U-box 273 357 - -
Vium5552g00009 769 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Vium5552g00009 769 CDD RING-Ubox_PUB 283 335 IPR045210 -
Vium5552g00009 769 PANTHER U BOX DOMAIN-CONTAINING 24 708 - -
Vium5552g00009 769 SMART arm_5 585 626 IPR000225 GO:0005515
Vium5552g00009 769 SMART arm_5 627 668 IPR000225 GO:0005515
Vium5552g00009 769 SMART arm_5 458 502 IPR000225 GO:0005515
Vium5552g00009 769 SMART arm_5 504 542 IPR000225 GO:0005515
Vium5552g00009 769 SMART arm_5 543 584 IPR000225 GO:0005515
Vium5552g00009 769 SMART arm_5 670 710 IPR000225 GO:0005515
Vium5552g00009 769 FunFam RING-type E3 ubiquitin transferase 281 355 - -
Vium5552g00009 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 355 IPR013083 -
Vium5552g00009 769 SUPERFAMILY ARM repeat 431 710 IPR016024 -
Vium5552g00009 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 515 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5552g00009 Vium-Chr5552 35880 40554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5552g00009 4 769 U-box Gene Family AT1G27910 64.405 0.0 978
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5552g00009 - - gmx:100804344 1285.78