Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5552g00002 ATGGTGAAGTACTCCAGAGAACCTGACAATCCCACAAAGTCTTGCAAGGCAAGGGGAGCCGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAGAGATACTTGGAGGATGTGTTGGCCCACAAACAAGCCATCCCTTTCCGACGTTTCTGCCGTGGTGTTGGGAGGACGGCTCAGGCCAAAAACAGACACTCCAATGGACAAGGACGTTGGCCCGCCAAATCTGCTAAATTCATCCTGGATTTGCTGAAAAATGCCGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTAGATGCTCTTTATATTTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACCTACCGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCCTGCCATATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCGGAGACACAATTGGCGACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCCTAA 546 0.4835 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKGALRSGASS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5552g00002 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 173 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vium5552g00002 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vium5552g00002 181 FunFam 60S ribosomal protein L17 1 175 - -
Vium5552g00002 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Vium5552g00002 181 MobiDBLite consensus disorder prediction 154 181 - -
Vium5552g00002 181 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vium5552g00002 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vium5552g00002 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vium5552g00002 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vium5552g00002 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5552g00002 Vium-Chr5552 6409 8242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5552g00002 1 174 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 91.954 1.57e-120 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5552g00002 K02880 - gmx:100305777 348.977