Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5549g00001 ATGGAGTTGCTCTTGCGAACAGTATCAAGGGAAAGTGTGCATCATCAGCTATCTGAAGGTGCTCAACTGCTTTTTGCATCCAGAGGGACTTGCCAGCAGACATTTGCTCTGATCATTGATGGAAAATCACTAACATATGCTCTAGAGGATAATATGAAAAACATGTTTCTAGAGCTTGCAAGTCATTGTGCATCTGTTATCTGCTGCCGTTCATCGCCAAAGCAGAAGGCTCTGGTTACTAGACTGGTCAAATCTGGAACTGGTAAAACAACATTAGCTATTGGTGATGGAGCTAATGATGTCGGAATGCTTCAAGAAGCAGACGTAGGGATTGGAATCAGTGGCGTCGAAGGAATGCAGGCCGTCATGTCTAGTGATATTGCAATTGCGCAGTTCAAGTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATGTCATCAATGATATGCTATTTTTTCTTTAAGAACATCACATTTGGATTCACCCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGACAGCCTGCATACAATGACTGGTTTTTGTCTCTCTATAGTGTCTTCTTTTCGTCACTTCCTGTAATTGCCCTTGGGGTCCTTGACCAGGATGTATCTGCCAGGTACTGCCTGAAGGTAAGTTGTGATTAA 666 0.4249 MELLLRTVSRESVHHQLSEGAQLLFASRGTCQQTFALIIDGKSLTYALEDNMKNMFLELASHCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADVGIGISGVEGMQAVMSSDIAIAQFKYLERLLLVHGHWCYRRMSSMICYFFFKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYSVFFSSLPVIALGVLDQDVSARYCLKVSCD 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5549g00001 221 SUPERFAMILY HAD-like 51 149 IPR036412 -
Vium5549g00001 221 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 218 - -
Vium5549g00001 221 Pfam Phospholipid-translocating P-type ATPase C-terminal 122 218 IPR032630 -
Vium5549g00001 221 Gene3D - 4 134 IPR023214 -
Vium5549g00001 221 SUPERFAMILY Calcium ATPase, transmembrane domain M 143 213 IPR023298 -
Vium5549g00001 221 NCBIfam HAD-IC family P-type ATPase 66 177 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5549g00001 Vium-Chr5549 2143 5357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5549g00001 9 217 Primary Pumps ATPases AT3G25610 83.732 6.82e-120 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5549g00001 K01530 - gmx:100776955 393.66