Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium553g00003 ATGGTTGAATCTGATATTGTGTTTCCATCATCCTATTCTCTTACTTCTTTTGACCACTCCACTGATACTGATAGTGTTGCTGGTTCACCCTCTCTGCAGAAACCATCATCTTCAACAACTCGTCACCACCATCAATCAAGAAAGAGAAAACTTGGCAGACCAGTAGGTTCTAAGAACAAGCCAAAACCACTACTTGTGATTGACAAAGCCAATAAGAGTGTTGTAAAACCTGTTTTCATTGAAGTTCCTGAAAGCTATGATGTGATTAGGACAATTGTTAAATTCGCTCGTCATCACCAAGTTAGCATCATAGTGCTGAATGCTTCAGGAACTGTTTCCAATGTCACTATTCGTAACACTCACTGTCATGCTTCTCCTTTCACTCTATATGGACCTTTCAAATTAATTTCCCTCACTGGTACTTACATACATAATGCTTCTTTATCATCAACCCTTAACAAGGACCCTCATTGTTCTTTCGGCATTTCTGTTTCTGGAATCAAAGAACAATCCTTCATCGGAGGAGTTGGAGGAAAAGTTGTTGCACAGAATGTAGTTATGGTGACAGCTGTTATTGTGAACAAATTTTAA 591 0.3875 MVESDIVFPSSYSLTSFDHSTDTDSVAGSPSLQKPSSSTTRHHHQSRKRKLGRPVGSKNKPKPLLVIDKANKSVVKPVFIEVPESYDVIRTIVKFARHHQVSIIVLNASGTVSNVTIRNTHCHASPFTLYGPFKLISLTGTYIHNASLSSTLNKDPHCSFGISVSGIKEQSFIGGVGGKVVAQNVVMVTAVIVNKF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium553g00003 196 MobiDBLite consensus disorder prediction 19 39 - -
Vium553g00003 196 ProSiteProfiles PPC domain profile profile. 72 196 IPR005175 -
Vium553g00003 196 CDD DUF296 76 188 IPR005175 -
Vium553g00003 196 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 193 IPR014476 GO:0003680
Vium553g00003 196 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 192 - -
Vium553g00003 196 MobiDBLite consensus disorder prediction 19 62 - -
Vium553g00003 196 MobiDBLite consensus disorder prediction 40 56 - -
Vium553g00003 196 Gene3D - 75 195 - -
Vium553g00003 196 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 191 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium553g00003 Vium-Chr553 53580 54170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium553g00003 48 194 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.228 5.14e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium553g00003 - - vun:114188375 323.939