Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5539g00020 ATGGCATCAGGTGGAACCGAAACTTTTCCTGATTTGGGTAAAAACTGCCAGCACCGCGACTGCAACCGCCTCGATTTTCTTCCTTACATCTGCGACGGTTGCCAACAGGTGTTTTGTTCGGAGCACAGATCATACAAGTCCCACGCGTGCCCGAAATCTGACCTAAGCAGAAAAGTGATTGTTTGCCAAACATGTTCCATGTCAATTGAGACCACCGGCTACGTGGGACAAGACGAGGATGCAATCTTGGAGAAGCACCACAAGTCTGGTAACTGTGATCCCACAAAGAAGAAGAAACCCATTTGCCCTGGCAAGGGATGCAAGGAGATTTTATCAATATCCAACACCAGCACATGTAAAACTTGCCACCTGAAGGTGTGCCTCAAACACCGTTTTCCTTCTGATCATGCTTGTAGCAGAGGAGTTTCAGCTTCTTCATCTTCAGTTGCTAATGGTGGGTTGAAGAATTTTCTTAGCTGCTTTTGTTTCAAGAACAGAACAACAGAAAAGGCCTAG 516 0.4632 MASGGTETFPDLGKNCQHRDCNRLDFLPYICDGCQQVFCSEHRSYKSHACPKSDLSRKVIVCQTCSMSIETTGYVGQDEDAILEKHHKSGNCDPTKKKKPICPGKGCKEILSISNTSTCKTCHLKVCLKHRFPSDHACSRGVSASSSSVANGGLKNFLSCFCFKNRTTEKA 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5539g00020 171 ProSiteProfiles Zinc finger AN1-type profile. 96 146 IPR000058 GO:0008270
Vium5539g00020 171 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Vium5539g00020 171 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 150 - -
Vium5539g00020 171 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Vium5539g00020 171 Gene3D - 77 156 IPR035896 -
Vium5539g00020 171 Gene3D - 2 64 IPR035896 -
Vium5539g00020 171 Pfam AN1-like Zinc finger 102 139 IPR000058 GO:0008270
Vium5539g00020 171 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Vium5539g00020 171 SUPERFAMILY AN1-like Zinc finger 94 143 IPR035896 -
Vium5539g00020 171 SMART AN1_Zf_4 102 143 IPR000058 GO:0008270
Vium5539g00020 171 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5539g00020 Vium-Chr5539 168561 169897 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5539g00020 1 166 C2H2 Transcription Factor Family AT3G28210 56.805 9.40e-64 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5539g00020 - - var:108345238 334.724